Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre07g1922 | ATGTTAGGGAATGGTCGGTGTGAGGCGATGTGCATCGATGGGACAAAGCGTCTTTGCCATATCCGGGGGAAGATGCACAAAAAAGTTTGGATTGCAGCTGGTGATATAATACTTGTGGGGCTTCGTGACTACCAGGATGACAAAGCTGATGTTATCCTCAAGTATATGCCTGATGAAGCAAGGCTGTTGAAGGCATATGGTGAACTTCCAGAGAGCACACGTCTCAACGAGGGTATTGCTGGTGGTATCGATGATGAGGATGATGGTGGCGCTGATGATTATCTTGAGTTTGAGGATGAAGATATCGACAAGATTTAG | 318 | 46.23 | MLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIAGGIDDEDDGGADDYLEFEDEDIDKI | 105 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 34683400 | 34683717 | + | CrPI670011_07g019220.1 | Cre07g1922 | 504503 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre07g1922 | 105 | CDD | S1_IF1A | 1 | 69 | IPR001253 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
Cre07g1922 | 105 | ProSiteProfiles | S1 domain IF1 type profile. | 1 | 56 | IPR006196 | GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro) | |
Cre07g1922 | 105 | ProSitePatterns | Eukaryotic initiation factor 1A signature. | 1 | 23 | IPR018104 | GO:0003743(InterPro)|GO:0006413(InterPro) | |
Cre07g1922 | 105 | Pfam | Translation initiation factor 1A / IF-1 | 1 | 53 | IPR006196 | GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro) | |
Cre07g1922 | 105 | PANTHER | EIF-1A | 1 | 105 | IPR001253 | GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0005737(PANTHER)|GO:0006413(InterPro)|GO:0006413(PANTHER) | |
Cre07g1922 | 105 | SUPERFAMILY | Nucleic acid-binding proteins | 1 | 104 | IPR012340 | - | |
Cre07g1922 | 105 | Gene3D | - | 1 | 105 | IPR012340 | - | |
Cre07g1922 | 105 | SMART | eIF1neu4 | 1 | 70 | IPR001253 | GO:0003743(InterPro)|GO:0006413(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre02g0578 | Cre-Chr2:2839431 | Cre07g1922 | Cre-Chr7:34683400 | 1.40E-48 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre07g1922 | K03236 | - | rcu:8265575 | 196.823 |