Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g1929 ATGGCGGTTGCCTCCGCCACTCCTCCTTTTTCTTCTCCATGTCTCTCGTCCCGTCGCCATCGCCGCCCTGATGTAATTACCCTCCGACCCTTTTCAATTTCGACCCCCAATTGCCCTCTCCAACTTCCCTTTTCCCTCAATTCCACACCCATTTCCCGACGTCCTCGATTTGCCCCCCAGGCTTCTATTGGAGACAGCGAGAGTGGTGGGTCGACCTCTGTCTCCGACGACGGCGGCTTTGTCGGCGAGGACGCTGCTGCTTTTGATCTTTCCGAGCAGAAATTGACTTCGTGGGTTTATTTCACCGTGATTTTGGGGGTTGTTCTGTTCGTGTTGAATGTTGTTTGGATTGATAACTCTGCTGGGGGGGTTGGGAAGGCCTTTGTGGATGCTGTTTCTGGAATTTCGGATAGTCATGAGGTTGTGATGTTGCTCCTCATATGCATTTTTGCCTTTGTGCATAGTGGTTTGGCTAGTCTCCGAGATCAGGGTGAGAAGCTTGTTGGTGAACGAGCTTTTCGGGTTTTGTTTGCTGGAGTTTCTCTGCCATTGGCTGTTAGCACTGTGGTGTATTTCATTAACCATCGATACGATGGAGTACAGTTATGGCAGCTCCAAAGTGTTCCCGGACTGCATCAACTTGTGTGGCTCAGTTCGTTTATCTCCTTCTTCTTCCTCTATCCTTCAACCTTTAATCTGCTGGAGGTCGCAGCAGTCGATAAACCGAAAATGCACCTTTGGGAAACAGGCATCATTAGAATAACTAGGCATCCACAGATGGTTGGACAGGTGATGTGGTGCCTTGCTCACACAGTTTGGATTGGGAACTCTGTTGCAGTAGCAGCTTCCATTGGCTTGATAGGACATCATCTGTTCGGAGTATGGAACGGGGACAGGAGGCTAGCCAAGCGATATGGGGCGGATTTTGAAGCCGTGAAAAGGCGAACGAGCATTGTCCCATTTGCTGCCATTGTCGATGGTCGTCAAAAGTTGCCCGATGATTACTACAAGGAATTCGTTCGCTTGCCATATCTATCCATCACTGCGCTGACAATAGGTGCTTACCTTGCTCACCCCCTTATGCAAGCTGCTAGTTTTAGGCTTCATTGGGTTTCTTTCCTTTCCCCTCTTCTCTGTTTCCTGGTGAGTGATTTCACTGATTCTCTCCTTGTTTTGTTTGTTTCTCTACACAATGCCTTGCTTTCTGCCAACGTAAAATGGTCCCCATTCTTTTCTTGGGCAATGTGCGTCTGTGGTGGGGTGGCAAATGTTGATAAAACCTTCTGCTGGAGAGTAATGGACTGCCAGTCCAGTCACACATTTGATTCAGATGAAAGTGACATCGATATTCAGACCGAAATCTATGAGAAGGGTGGGAGTATAGATGATATTCGTAATGACTTGGACTTTTGCTTGCGTGACGATGATAAGGTAGCAGAGCAATCTGTTGTAGATTTACCTATGGATGGAATAGAACCATACATAGGTATGGAGTTCAGTTCTAGAGATGAAGCTAGAGAATTCTATGTTAATTATGGTAGGCGCGTTGGATTCACCGTACGAATACATCATAATCGCCGTTCCCGTGTAAACAATCAGGTGATTGGTCAGGATTTTGTCTGCTCAAAAGAAGGATTCCGTGCTAAGAAGTATGTATGCAGAAAAGACAGGATACTTCCAGCACCACCAATTACACGAGAGGGATGTCAAGCAATGATGAGATTAGCTTTAAGAGATGGAGGGAAGTGGGCCGTCACAAAATTTGTTAAGGATCATAATCATCTGCTACTGAGTCCTAGTAAAGTCCCATGGAGAGGATCTGGAAAAAACTTGCTCAGTGAGGATGAAAAGGATAAGCGAATTCGAGAGTTATCTGTGGAGCTGTACAACGAGAGGCAGAAATATAAGAGAAAATGTGCTGCATATGAAGAACAATTGAAGACAATTTTGAAGGAGGTGGAAATGCACACAGAATGTATATCAAACAAAGTTGCAGAAGTAGTAAAGAGCATTAGAGAAGTTGAAGAGGAAGAAGAATCAGGAGTCCCTATTGGAAGTTTTGATGAACCCAGAACTAACCAAATCGAATGCCCCGCTACTCAACAACTCTTAAACGCAGATTTCTCGACAGTGTATGCAGGCACAACATAG 2151 45.75 MAVASATPPFSSPCLSSRRHRRPDVITLRPFSISTPNCPLQLPFSLNSTPISRRPRFAPQASIGDSESGGSTSVSDDGGFVGEDAAAFDLSEQKLTSWVYFTVILGVVLFVLNVVWIDNSAGGVGKAFVDAVSGISDSHEVVMLLLICIFAFVHSGLASLRDQGEKLVGERAFRVLFAGVSLPLAVSTVVYFINHRYDGVQLWQLQSVPGLHQLVWLSSFISFFFLYPSTFNLLEVAAVDKPKMHLWETGIIRITRHPQMVGQVMWCLAHTVWIGNSVAVAASIGLIGHHLFGVWNGDRRLAKRYGADFEAVKRRTSIVPFAAIVDGRQKLPDDYYKEFVRLPYLSITALTIGAYLAHPLMQAASFRLHWVSFLSPLLCFLVSDFTDSLLVLFVSLHNALLSANVKWSPFFSWAMCVCGGVANVDKTFCWRVMDCQSSHTFDSDESDIDIQTEIYEKGGSIDDIRNDLDFCLRDDDKVAEQSVVDLPMDGIEPYIGMEFSSRDEAREFYVNYGRRVGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYVCRKDRILPAPPITREGCQAMMRLALRDGGKWAVTKFVKDHNHLLLSPSKVPWRGSGKNLLSEDEKDKRIRELSVELYNERQKYKRKCAAYEEQLKTILKEVEMHTECISNKVAEVVKSIREVEEEEESGVPIGSFDEPRTNQIECPATQQLLNADFSTVYAGTT 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 34745498 34754162 - CrPI670011_07g019290.1 Cre07g1929 504510

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g1929 716 PANTHER 15-CIS-ZETA-CAROTENE ISOMERASE, CHLOROPLASTIC 60 370 - GO:0009507(PANTHER)|GO:0016120(PANTHER)|GO:0090471(PANTHER)
Cre07g1929 716 Pfam FAR1 DNA-binding domain 507 597 IPR004330 -
Cre07g1929 716 Gene3D - 136 321 - -
Cre07g1929 716 Pfam NnrU protein 142 361 IPR009915 -
Cre07g1929 716 Coils Coil 625 652 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g1929 K15744 - - csv:101211624 661.759
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0623 Cre-Chr2:3158457 Cre07g1929 Cre-Chr7:34745498 3.70E-09 dispersed
Cre07g1929 Cre-Chr7:34745498 Cre11g0547 Cre-Chr11:2473174 1.60E-09 dispersed
Cre07g1929 Cre-Chr7:34745498 Cre04g1754 Cre-Chr4:35573241 9.50E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1089 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone18ag0883 . . . . . Blo02g00422 Blo07g00080 . . . Bpe13g00744 Bma02g00995 Bma06g01412 . . . . . . . . . . . . . . . . Cla07g01497 Cam07g1596 Cec07g1692 Cco07g1655 Clacu07g1586 Cmu07g1552 Cre07g1929 . . . .
Vvi5g1214 . . . . . . . . . . Cma06g01644 Cma14g01501 Car06g01397 . . Cpe08g00086 Cpe03g01262 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo06g01646 Cmo14g01537 . . . . . . . . . . . . . Cla07g01497 Cam07g1596 Cec07g1692 Cco07g1655 Clacu07g1586 Cmu07g1552 Cre07g1929 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011013 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54100 PF07298 NnrU 2.10E-50 CL0115 Cre TF