Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g1930 ATGGCAAACTCGATGGCTAGATCTTTTTTGCAGGTTGCTGCTACGGAAGAGGTTGCTTCTCCTCTCCGAGTTGTTCAGATTGAAGGATTGGTTATATTGAAGATAATCAAGCATTGCAAGGAGTTTTCACCAGCTCTTGTTACTGGGCAACTTCTTGGGTTAGATGTTGGTAGCGTTCTTGAAGTCACTAATTGCTTTCCCTTCCCGACTCGGGAGGAGGATGAGGAGATTGAAGCCGATGGTGCTAATTACCAGCTTGAAATGATGAGATGCTTGAGAGAAGTCAATGTTGACAATAACACTGTTGGATGGTACCAGTCGACCTTCTTAGGTTCATATCAGACTGTAGAGCTGATTGAGACCTTTATGAATTATCAGGAAAATATCAGGCGGTGTGTCTGCATAATTTATGACCCATCAAGGTCTAATCAAGGCGTCTTAGCTCTCAAAGCATTGAAGCTTTCAGATTCTTTTATGGAACTTTACCGCACTAACAGCTTTACAGGAGAGAAGTTGAGAGAGAAGAACTTATCATGGGTGGATATTTTTGAGGAAATACCTATCAAAGTTTCGAATTCAGCCCTCATTAGTGCTTTTATGACGGAGCTTGAAGCTGACTCTCCAGTCACCCAGTGTGATTATGACCGCCTGCAACTTTCAACAAATCCATTTATGGAGAGGAATGTGGAATTTCTGATTGAATGTATGGATGATTTGTCAGTGGAGCAGCAGAAGTTCCAATTTTATTATCGGAGCCTGACCCGTCAGCAAGCTCAACAACAAGCATGGCTTCAGAAAAGAAGGGCCGAGAACATGATGAGGAAGGCAGCAGGAGAAGAGCCTCTCCCTGAGGAGGATCCTACAAACCCCATCTTTAAACCACTCCCTGAGCCATCACGTTTGGATAGCTATCTCATAACGAATCAAATAGCAAACTATTGCAATCAAATTAATGGGGTTGCTGGACAGAGTTTCAACAGACTTCATTTGATGAAGGCCCTTCACGACAATTAA 1014 42.9 MANSMARSFLQVAATEEVASPLRVVQIEGLVILKIIKHCKEFSPALVTGQLLGLDVGSVLEVTNCFPFPTREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTFLGSYQTVELIETFMNYQENIRRCVCIIYDPSRSNQGVLALKALKLSDSFMELYRTNSFTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEADSPVTQCDYDRLQLSTNPFMERNVEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQAWLQKRRAENMMRKAAGEEPLPEEDPTNPIFKPLPEPSRLDSYLITNQIANYCNQINGVAGQSFNRLHLMKALHDN 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 34757618 34760969 + CrPI670011_07g019300.1 Cre07g1930 504511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g1930 337 CDD MPN_eIF3h 23 286 IPR027524 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Cre07g1930 337 Hamap Eukaryotic translation initiation factor 3 subunit H [EIF3H]. 20 337 IPR027524 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Cre07g1930 337 Gene3D Cytidine Deaminase, domain 2 1 214 - -
Cre07g1930 337 ProSiteProfiles MPN domain profile. 25 158 IPR037518 -
Cre07g1930 337 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 22 127 IPR000555 GO:0005515(InterPro)|GO:0008233(InterPro)|GO:0008237(InterPro)
Cre07g1930 337 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 9 328 IPR050242 GO:0003743(PANTHER)|GO:0005829(PANTHER)|GO:0005852(PANTHER)|GO:0008237(PANTHER)|GO:0016282(PANTHER)|GO:0042788(PANTHER)
Cre07g1930 337 SMART pad1_6 24 157 IPR000555 GO:0005515(InterPro)|GO:0008233(InterPro)|GO:0008237(InterPro)
Cre07g1930 337 FunFam Eukaryotic translation initiation factor 3 subunit H 4 213 - -
Cre07g1930 337 Pfam C-terminal region of eIF3h 143 335 IPR045810 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g1930 K03247 - csv:101211860 666.766