Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre07g1930 | ATGGCAAACTCGATGGCTAGATCTTTTTTGCAGGTTGCTGCTACGGAAGAGGTTGCTTCTCCTCTCCGAGTTGTTCAGATTGAAGGATTGGTTATATTGAAGATAATCAAGCATTGCAAGGAGTTTTCACCAGCTCTTGTTACTGGGCAACTTCTTGGGTTAGATGTTGGTAGCGTTCTTGAAGTCACTAATTGCTTTCCCTTCCCGACTCGGGAGGAGGATGAGGAGATTGAAGCCGATGGTGCTAATTACCAGCTTGAAATGATGAGATGCTTGAGAGAAGTCAATGTTGACAATAACACTGTTGGATGGTACCAGTCGACCTTCTTAGGTTCATATCAGACTGTAGAGCTGATTGAGACCTTTATGAATTATCAGGAAAATATCAGGCGGTGTGTCTGCATAATTTATGACCCATCAAGGTCTAATCAAGGCGTCTTAGCTCTCAAAGCATTGAAGCTTTCAGATTCTTTTATGGAACTTTACCGCACTAACAGCTTTACAGGAGAGAAGTTGAGAGAGAAGAACTTATCATGGGTGGATATTTTTGAGGAAATACCTATCAAAGTTTCGAATTCAGCCCTCATTAGTGCTTTTATGACGGAGCTTGAAGCTGACTCTCCAGTCACCCAGTGTGATTATGACCGCCTGCAACTTTCAACAAATCCATTTATGGAGAGGAATGTGGAATTTCTGATTGAATGTATGGATGATTTGTCAGTGGAGCAGCAGAAGTTCCAATTTTATTATCGGAGCCTGACCCGTCAGCAAGCTCAACAACAAGCATGGCTTCAGAAAAGAAGGGCCGAGAACATGATGAGGAAGGCAGCAGGAGAAGAGCCTCTCCCTGAGGAGGATCCTACAAACCCCATCTTTAAACCACTCCCTGAGCCATCACGTTTGGATAGCTATCTCATAACGAATCAAATAGCAAACTATTGCAATCAAATTAATGGGGTTGCTGGACAGAGTTTCAACAGACTTCATTTGATGAAGGCCCTTCACGACAATTAA | 1014 | 42.9 | MANSMARSFLQVAATEEVASPLRVVQIEGLVILKIIKHCKEFSPALVTGQLLGLDVGSVLEVTNCFPFPTREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTFLGSYQTVELIETFMNYQENIRRCVCIIYDPSRSNQGVLALKALKLSDSFMELYRTNSFTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEADSPVTQCDYDRLQLSTNPFMERNVEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQAWLQKRRAENMMRKAAGEEPLPEEDPTNPIFKPLPEPSRLDSYLITNQIANYCNQINGVAGQSFNRLHLMKALHDN | 337 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 34757618 | 34760969 | + | CrPI670011_07g019300.1 | Cre07g1930 | 504511 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre07g1930 | 337 | CDD | MPN_eIF3h | 23 | 286 | IPR027524 | GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro) | |
Cre07g1930 | 337 | Hamap | Eukaryotic translation initiation factor 3 subunit H [EIF3H]. | 20 | 337 | IPR027524 | GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro) | |
Cre07g1930 | 337 | Gene3D | Cytidine Deaminase, domain 2 | 1 | 214 | - | - | |
Cre07g1930 | 337 | ProSiteProfiles | MPN domain profile. | 25 | 158 | IPR037518 | - | |
Cre07g1930 | 337 | Pfam | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 22 | 127 | IPR000555 | GO:0005515(InterPro)|GO:0008233(InterPro)|GO:0008237(InterPro) | |
Cre07g1930 | 337 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED | 9 | 328 | IPR050242 | GO:0003743(PANTHER)|GO:0005829(PANTHER)|GO:0005852(PANTHER)|GO:0008237(PANTHER)|GO:0016282(PANTHER)|GO:0042788(PANTHER) | |
Cre07g1930 | 337 | SMART | pad1_6 | 24 | 157 | IPR000555 | GO:0005515(InterPro)|GO:0008233(InterPro)|GO:0008237(InterPro) | |
Cre07g1930 | 337 | FunFam | Eukaryotic translation initiation factor 3 subunit H | 4 | 213 | - | - | |
Cre07g1930 | 337 | Pfam | C-terminal region of eIF3h | 143 | 335 | IPR045810 | - |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre07g1930 | K03247 | - | csv:101211860 | 666.766 |