Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g1953 ATGGGAAGAGGCAGAGTTCAGCTGAAGAGAATAGAGAACAAGATCAGTCGCCAAGTCACTTTCTCAAAGCGTAGAGCTGGTTTACTCAAAAAGGCCCATGAGATCTCTGTTCTTTGTGAGGCTGATGTTGCTTTGATTGTCTTCTCCACTAAAGGCAAACTCTTTGAGTACTCTTCTGATTCCAGCATGGAGAAGATCTTAGAAAAATATGAGAGATATTGTTATGCAGAGAAACCATTGGCCCCAAATGGAGATCCTGAATTACAGGTAAGTTGGTGTCAGGAGTATCCAAAACTTGCAGCCAGATTGGAAATTATACAGAAGAACTTAAGGCATTATTTGGGAGAAGAACTTGACCCTTTGAATTTGAGAGAACTTCAAAGCTTGGAGCAACAACTTGATACATCACTCAAGCGCATAAGATCAAGAAAGAACCAACTAATGCAAGAATCCATTTCAACACTACACAAAAAGGAAAGGGAATTGCAAGAGGAGAACAGGCAGCTTGCAAATAAGGTGAAAGAGAATGAGAAGGTTTTGGTTGAACGTGGACAATGCGATGACCTCCCAAACTTGGTTCGTAATCAGCCCATTCTTGCAATGCCGTCACCAATTATTCCTTCTTTATCTATTGGAGTAAACTTGCATGGGAGAGGATCAGATGAAGATGAAACAAGGGCAACAAGCGTCAACAACATCCAAATACCAGCATGGATGCTTAGCCATGTGACTGAAAATCCTCATAACTAA 750 41.07 MGRGRVQLKRIENKISRQVTFSKRRAGLLKKAHEISVLCEADVALIVFSTKGKLFEYSSDSSMEKILEKYERYCYAEKPLAPNGDPELQVSWCQEYPKLAARLEIIQKNLRHYLGEELDPLNLRELQSLEQQLDTSLKRIRSRKNQLMQESISTLHKKERELQEENRQLANKVKENEKVLVERGQCDDLPNLVRNQPILAMPSPIIPSLSIGVNLHGRGSDEDETRATSVNNIQIPAWMLSHVTENPHN 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 34944622 34950272 + CrPI670011_07g019530.1 Cre07g1953 504534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g1953 249 Gene3D - 13 82 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre07g1953 249 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre07g1953 249 Pfam K-box region 90 173 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cre07g1953 249 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre07g1953 249 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 195 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cre07g1953 249 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre07g1953 249 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Cre07g1953 249 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre07g1953 249 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre07g1953 249 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre07g1953 249 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre07g1953 249 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre07g1953 249 Coils Coil 126 182 - -
Cre07g1953 249 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cre07g1953 249 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g2176 Cre-Chr4:38903734 Cre07g1953 Cre-Chr7:34944622 1.90E-30 dispersed
Cre05g0947 Cre-Chr5:8669605 Cre07g1953 Cre-Chr7:34944622 3.60E-43 dispersed
Cre07g1953 Cre-Chr7:34944622 Cre08g0991 Cre-Chr8:23029370 9.10E-61 dispersed
Cre07g1952 Cre-Chr7:34922361 Cre07g1953 Cre-Chr7:34944622 7.20E-42 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54103 PF01486 K-box 7.40E-29 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g1953 K09264 - csv:101218674 426.017