Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g1973 ATGTCGCCTGTTGATTCTTCACGGGAGGAAAATGTTTACATGGCCAAGTTGGCCGAACAGGCTGAACGATATGAGGAAATGGTAGAGTTCATGGAGAAAGTTGCCAAGACTGTGGATGTCGAGGAGCTGACTGTTGAGGAGAGGAATCTCCTCTCTGTTGCTTACAAGAATGTCATTGGGGCTCGGAGGGCCTCATGGAGGATTATTTCTTCCATTGAGCAGAAGGAAGAGAGTCGGGGAAATGAGGACCATGTTGCAATTATCAAGGATTACCGTGGCAAAATCGAGACTGAACTGAGCAAGATTTGTGATGGAATTTTGAGCCTACTTGAGTCTCATCTCATCCCATCAGCCTCATCTGCTGAGTCAAAGGTGTTTTATCTCAAAATGAAAGGTGATTACCACAGGTACCTGGCTGAGTTTAAGACTGGAGCTGAACGAAAAGAAGCAGCTGAGAGCACATTGTTAGCCTACAAGTCTGCTCAGGATATTGCTCTTGCCGAATTGGCTCCTACTCATCCAATTAGGCTAGGTCTTGCTCTTAACTTCTCAGTGTTTTATTATGAGATCCTTAATTCGCCAGACCGTGCTTGCAATTTGGCAAAGCAGGCTTTTGACGAAGCAATTTCTGAGCTTGATACATTGGGTGAAGAATCATACAAGGATAGCACCTTGATCATGCAACTCCTCCGAGACAACTTGACCCTTTGGACTTCTGATATTGGGGACGAAGCTGGCGATGAGATTAAGGAAGCATCAAAACGTGAATCAGGGGAGGGACAGTAG 786 45.55 MSPVDSSREENVYMAKLAEQAERYEEMVEFMEKVAKTVDVEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVAIIKDYRGKIETELSKICDGILSLLESHLIPSASSAESKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLLAYKSAQDIALAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSDIGDEAGDEIKEASKRESGEGQ 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 35160388 35161982 + CrPI670011_07g019730.1 Cre07g1973 504554

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g1973 261 FunFam 14-3-3 protein epsilon 4 251 - -
Cre07g1973 261 SUPERFAMILY 14-3-3 protein 7 240 IPR036815 -
Cre07g1973 261 Coils Coil 14 34 - -
Cre07g1973 261 PIRSF 14-3-3 3 250 IPR000308 -
Cre07g1973 261 ProSitePatterns 14-3-3 proteins signature 1. 48 58 IPR023409 -
Cre07g1973 261 PANTHER 14-3-3 PROTEIN 7 243 IPR000308 GO:0005737(PANTHER)|GO:0007165(PANTHER)|GO:0034613(PANTHER)
Cre07g1973 261 SMART 1433_4 8 251 IPR023410 -
Cre07g1973 261 ProSitePatterns 14-3-3 proteins signature 2. 220 239 IPR023409 -
Cre07g1973 261 Gene3D - 2 251 IPR036815 -
Cre07g1973 261 PRINTS 14-3-3 protein zeta signature 184 210 IPR000308 -
Cre07g1973 261 PRINTS 14-3-3 protein zeta signature 122 144 IPR000308 -
Cre07g1973 261 PRINTS 14-3-3 protein zeta signature 157 183 IPR000308 -
Cre07g1973 261 PRINTS 14-3-3 protein zeta signature 211 240 IPR000308 -
Cre07g1973 261 PRINTS 14-3-3 protein zeta signature 42 71 IPR000308 -
Cre07g1973 261 PRINTS 14-3-3 protein zeta signature 91 115 IPR000308 -
Cre07g1973 261 Pfam 14-3-3 protein 14 238 IPR023410 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g1973 K06630 - - csv:101222068 501.901
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g1973 Cre-Chr7:35160388 Cre11g1846 Cre-Chr11:30105296 3.20E-117 dispersed
Cre07g1973 Cre-Chr7:35160388 Cre08g1063 Cre-Chr8:23757153 1.60E-119 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre08g1063 . 4 242 14-3-3 family AT4G09000 90.8 7.2e-119 424.1
Cre11g1846 . 5 242 14-3-3 family AT4G09000 90.3 3.6e-118 421.8
Cre07g1973 . 6 241 14-3-3 family AT4G09000 86.9 1.3e-112 403.3
Cre08g1124 . 10 246 14-3-3 family AT4G09000 74.7 3.2e-98 355.5
Cre07g0637 . 7 238 14-3-3 family AT4G09000 72.6 5.2e-93 338.2
Cre05g2547 . 4 239 14-3-3 family AT4G09000 72.3 1.7e-91 333.2
Cre08g0978 . 4 239 14-3-3 family AT4G09000 71.8 8.3e-91 330.9
Cre08g1047 . 71 308 14-3-3 family AT4G09000 68.8 5.4e-90 328.2
Cre11g1836 . 5 236 14-3-3 family AT4G09000 73.1 1.6e-89 326.6
Cre08g1063 . 6 261 14-3-3 family AT1G78300 89.8 1.6e-124 442.6
Cre11g1846 . 5 258 14-3-3 family AT1G78300 91.0 1.6e-124 442.6
Cre07g1973 . 6 253 14-3-3 family AT1G78300 87.1 5.5e-117 417.5
Cre08g1124 . 11 247 14-3-3 family AT1G78300 75.9 6.1e-100 360.9
Cre07g0637 . 7 247 14-3-3 family AT1G78300 71.6 2.3e-94 342.4
Cre08g0978 . 8 257 14-3-3 family AT1G78300 70.6 5.5e-93 337.8
Cre05g2547 . 8 255 14-3-3 family AT1G78300 70.8 9.5e-93 337.0
Cre08g1047 . 73 322 14-3-3 family AT1G78300 67.9 6.1e-92 334.3
Cre11g1836 . 1 243 14-3-3 family AT1G78300 69.4 5.7e-90 327.8
Cre07g1973 . 6 259 14-3-3 family AT5G38480 90.6 7.8e-124 440.3
Cre08g1063 . 6 252 14-3-3 family AT5G38480 85.8 1.1e-114 409.8
Cre11g1846 . 6 252 14-3-3 family AT5G38480 85.4 2.5e-114 408.7
Cre08g1124 . 10 251 14-3-3 family AT5G38480 74.0 2.8e-97 352.1
Cre05g2547 . 8 255 14-3-3 family AT5G38480 73.6 4.9e-94 341.3
Cre07g0637 . 7 247 14-3-3 family AT5G38480 72.4 2.4e-93 339.0
Cre08g1047 . 77 319 14-3-3 family AT5G38480 72.2 7.1e-93 337.4
Cre08g0978 . 8 255 14-3-3 family AT5G38480 72.0 9.3e-93 337.0
Cre11g1836 . 5 248 14-3-3 family AT5G38480 71.1 2.1e-89 325.9
Cre08g1063 . 3 242 14-3-3 family AT1G35160 90.0 1.5e-118 422.9
Cre11g1846 . 4 242 14-3-3 family AT1G35160 89.5 7.4e-118 420.6
Cre07g1973 . 6 240 14-3-3 family AT1G35160 86.8 6.1e-112 401.0
Cre08g1124 . 1 246 14-3-3 family AT1G35160 73.2 3.8e-98 355.1
Cre07g0637 . 2 237 14-3-3 family AT1G35160 71.4 1.4e-92 336.7
Cre05g2547 . 8 239 14-3-3 family AT1G35160 73.1 2.7e-91 332.4
Cre08g0978 . 8 239 14-3-3 family AT1G35160 72.6 1.3e-90 330.1
Cre08g1047 . 71 308 14-3-3 family AT1G35160 68.8 2.2e-90 329.3
Cre11g1836 . 5 236 14-3-3 family AT1G35160 73.1 1.9e-89 326.2
Cre07g1973 . 5 254 14-3-3 family AT5G16050 86.4 2.6e-117 418.7
Cre08g1063 . 3 253 14-3-3 family AT5G16050 79.3 1.3e-108 389.8
Cre11g1846 . 4 251 14-3-3 family AT5G16050 79.5 5.9e-106 380.9
Cre08g1124 . 10 248 14-3-3 family AT5G16050 71.1 2.2e-92 335.9
Cre08g0978 . 3 246 14-3-3 family AT5G16050 66.3 2.6e-85 312.4
Cre07g0637 . 1 246 14-3-3 family AT5G16050 65.5 5.7e-85 311.2
Cre05g2547 . 3 246 14-3-3 family AT5G16050 65.0 9.8e-85 310.5
Cre08g1047 . 74 319 14-3-3 family AT5G16050 64.9 2.2e-84 309.3
Cre11g1836 . 5 242 14-3-3 family AT5G16050 66.3 1.7e-81 299.7
Cre08g1124 . 9 246 14-3-3 family AT5G10450 86.6 5.1e-113 404.4
Cre11g1846 . 1 242 14-3-3 family AT5G10450 79.4 1.5e-104 376.3
Cre08g1063 . 3 251 14-3-3 family AT5G10450 76.8 1.9e-104 375.9
Cre07g1973 . 7 259 14-3-3 family AT5G10450 74.0 3.7e-103 371.7
Cre07g0637 . 1 238 14-3-3 family AT5G10450 67.6 5.7e-88 321.2
Cre08g1047 . 77 308 14-3-3 family AT5G10450 67.2 2.6e-85 312.4
Cre05g2547 . 3 239 14-3-3 family AT5G10450 66.3 7.6e-85 310.8
Cre11g1836 . 5 236 14-3-3 family AT5G10450 67.7 3.8e-84 308.5
Cre08g0978 . 3 239 14-3-3 family AT5G10450 65.4 2.5e-83 305.8
Cre07g1973 . 4 261 14-3-3 family AT3G02520 91.5 1.9e-128 455.7
Cre08g1063 . 6 252 14-3-3 family AT3G02520 87.1 8.7e-118 420.2
Cre11g1846 . 5 258 14-3-3 family AT3G02520 84.8 5.6e-117 417.5
Cre08g1124 . 10 248 14-3-3 family AT3G02520 75.7 6.3e-100 360.9
Cre08g0978 . 8 257 14-3-3 family AT3G02520 69.4 3.3e-93 338.6
Cre05g2547 . 8 256 14-3-3 family AT3G02520 68.9 4.3e-93 338.2
Cre08g1047 . 73 321 14-3-3 family AT3G02520 69.4 1.7e-92 336.3
Cre07g0637 . 4 238 14-3-3 family AT3G02520 71.7 1.8e-91 332.8
Cre11g1836 . 1 241 14-3-3 family AT3G02520 71.6 1.2e-90 330.1
Cre08g1124 . 9 246 14-3-3 family AT5G65430 88.2 6.8e-115 410.6
Cre11g1846 . 1 242 14-3-3 family AT5G65430 80.2 4.9e-105 377.9
Cre08g1063 . 8 242 14-3-3 family AT5G65430 80.5 9.2e-104 373.6
Cre07g1973 . 7 241 14-3-3 family AT5G65430 79.2 1.2e-103 373.2
Cre07g0637 . 1 238 14-3-3 family AT5G65430 69.3 2.2e-89 325.9
Cre05g2547 . 8 239 14-3-3 family AT5G65430 69.8 4.6e-87 318.2
Cre08g1047 . 77 308 14-3-3 family AT5G65430 69.4 1.7e-86 316.2
Cre11g1836 . 5 236 14-3-3 family AT5G65430 69.4 1.9e-85 312.8
Cre08g0978 . 8 239 14-3-3 family AT5G65430 68.5 9.5e-85 310.5
Cre11g1866 . 1 81 14-3-3 family AT5G65430 90.1 1.6e-36 150.2
Cre07g0637 . 1 257 14-3-3 family AT2G42590 81.0 2.9e-116 415.2
Cre08g1047 . 75 314 14-3-3 family AT2G42590 77.9 5.7e-104 374.4
Cre05g2547 . 6 257 14-3-3 family AT2G42590 75.5 7.4e-104 374.0
Cre08g0978 . 6 253 14-3-3 family AT2G42590 75.4 1.1e-102 370.2
Cre11g1836 . 3 245 14-3-3 family AT2G42590 74.9 3.5e-101 365.2
Cre07g1973 . 8 248 14-3-3 family AT2G42590 73.0 1.5e-91 333.2
Cre08g1063 . 8 248 14-3-3 family AT2G42590 70.5 4.2e-91 331.6
Cre11g1846 . 8 245 14-3-3 family AT2G42590 71.4 2.1e-90 329.3
Cre08g1124 . 11 248 14-3-3 family AT2G42590 64.7 8.0e-82 300.8
Cre08g1047 . 73 313 14-3-3 family AT1G22300 80.5 1.0e-104 376.7
Cre07g0637 . 6 242 14-3-3 family AT1G22300 78.5 2.0e-103 372.5
Cre05g2547 . 5 244 14-3-3 family AT1G22300 77.5 3.7e-102 368.2
Cre08g0978 . 5 244 14-3-3 family AT1G22300 76.7 1.8e-101 365.9
Cre11g1836 . 1 241 14-3-3 family AT1G22300 76.8 1.7e-99 359.4
Cre07g1973 . 4 246 14-3-3 family AT1G22300 70.4 3.9e-91 331.6
Cre08g1063 . 8 246 14-3-3 family AT1G22300 70.3 1.0e-88 323.6
Cre11g1846 . 8 245 14-3-3 family AT1G22300 69.3 2.6e-87 318.9
Cre08g1124 . 11 248 14-3-3 family AT1G22300 64.7 1.5e-79 293.1
Cre07g0637 . 6 246 14-3-3 family AT1G34760 80.5 2.8e-105 378.6
Cre08g1047 . 73 317 14-3-3 family AT1G34760 80.4 6.1e-105 377.5
Cre05g2547 . 5 247 14-3-3 family AT1G34760 80.2 1.0e-104 376.7
Cre08g0978 . 5 247 14-3-3 family AT1G34760 79.4 6.8e-104 374.0
Cre11g1836 . 1 244 14-3-3 family AT1G34760 77.5 5.0e-99 357.8
Cre07g1973 . 4 250 14-3-3 family AT1G34760 70.9 1.2e-89 326.6
Cre08g1063 . 8 245 14-3-3 family AT1G34760 72.3 6.2e-89 324.3
Cre11g1846 . 8 249 14-3-3 family AT1G34760 69.4 5.2e-88 321.2
Cre08g1124 . 11 247 14-3-3 family AT1G34760 64.1 2.9e-78 288.9
Cre05g2547 . 2 254 14-3-3 family AT1G26480 86.6 1.8e-118 422.5
Cre08g0978 . 2 254 14-3-3 family AT1G26480 85.8 8.8e-118 420.2
Cre07g0637 . 3 242 14-3-3 family AT1G26480 80.8 4.8e-108 387.9
Cre08g1047 . 74 321 14-3-3 family AT1G26480 77.0 8.5e-105 377.1
Cre11g1836 . 3 242 14-3-3 family AT1G26480 78.3 1.2e-101 366.7
Cre08g1063 . 8 260 14-3-3 family AT1G26480 72.0 5.7e-93 337.8
Cre11g1846 . 8 247 14-3-3 family AT1G26480 73.8 1.4e-91 333.2
Cre07g1973 . 5 256 14-3-3 family AT1G26480 72.0 2.4e-91 332.4
Cre08g1124 . 11 244 14-3-3 family AT1G26480 66.2 1.9e-80 296.2
Cre05g2547 . 5 237 14-3-3 family AT1G78220 52.6 1.0e-64 243.8
Cre07g0637 . 6 236 14-3-3 family AT1G78220 51.3 1.1e-63 240.4
Cre08g1047 . 73 306 14-3-3 family AT1G78220 50.6 9.6e-63 237.3
Cre08g0978 . 5 237 14-3-3 family AT1G78220 50.9 2.1e-62 236.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000486 6 4 5 6 5 2 5 3 3 3 3 3 6 3 2 6 3 6 6 3 3 3 3 3 3 3 3 6 4 0 114