Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g1976 ATGGGTTCTTCTTCGTCTTCTTTTTCAGTCATCAAATGGTTCTCTTTCTGCAGACCCACCTCTCCAATTCTTCTTTCCAAGCTCTTTTTGCTCTTCTCTATCCTCTTCTTCTTTCAGTCTGATGTTATTTTCGGCGATTCCGACAAATCCGTCCTTCTTCAGTTCAAAAATGCTCTTTCCGACCCATCCGCCTTGCTTTCCACCTGGACTCCCACTGGTTCTGACTACTGCTTCTGGTTTGGCGTTTCCTGCGACTTCAATTCTCGGGTTGTCTCTCTCAACATTTCTGGGAATGGTGGTTCAGGTAATTCCAATGCCTTTTCCTGCTCTGTTTCTTCTAAATTCCCTCTTTATGGACTTGGAATCAGGAGGGGTTGTGTGGCTAATAGAGGCCTACTCATTGGCAAGCTTCCGCCGGTTATTGGGAACCTCACTCAGCTCAGGACTTTGTCTCTTCCGTTTCATGCTTTTGAGGGTGAGCTTCCTCGTGAAATCTTTGGATTGGAGAACCTTGAGGTTCTTGATCTGGAAGGGAACTCTGTCACTGGGTTGCTTCCTAATGATTTTGCCAGGCTGAGCAAGTTGCGTGTTCTCAATCTTGCATTCAATAAGCTTACTGGTGAGATTCCTAGCTCGCTTTCGGGTTGTCAGAGTTTAGAGATCTTGAATTTAGCTGGGAATCAGTTGAATGGGACAATTCCACAGTTTGTTGGTCATTTGAGAGGGGTCTACTTGTCTTTCAATTTTTTTACGGGATCCATTCCGAGTGAGATTGGGAATAACTGTGAAAAGCTTGAGCATCTCGACCTGTCTGGTAATTTTTTGGTCAGTGGGATTCCAAGCAATCTGGGAAATTGCACACAGTTGCAGACATTGTTGCTGTATTCCAATATGCTGGAGGAGGCCATTCCAGCTGGAATTGGTAAGTTGCAGAAGCTGGAAGTGCTCGATCTTTCGAGGAATAGCCTCAGTGGTCCAATACCCTCCGAGCTAGGAAATTGCTTGCAGTTGTCTGTTCTCGTGCTCTCGAATCTCTTCAATCCAATTCCCAAAATCAACTACACAGACGGCGACTCTCCAACTGAGGAACTTAGTGATGATAGTTTTAACTATTTTGCGGGTGGTATACCTGAGACAATAACAGCCCTTCCAAAGCTGAGGATATTGTGGGCCCCTAGTGCAAACCTCAATGGCAGATTCCCTTCCCAATGGGGTAAGTGCGAAAGCTTGGAGATGATCAACTTAGCTGGTAATTACCTTTATGGGGAGCTTCCCAGTGGGTTTAGCGTCTGCAACAAGCTTCAAGTCCTTGATTTAAGCTCAAACCGGCTTTCTGGAGAACTTGATAAAAACCTACCAGTTCCTTACATGACTCTGTTTGATCTTAGCCATAACCACTTTATCGGTGAGATTCCTACGTTCTGTGGCAATGATTGCTCACCACCAAAGTTCCGTTTAAATGGATATTTGGATCTTGACGATGCCTCGTCTCGGTATCTAGCATTTTTTGCCACTAGTATTCGAAATGCAACCCCTTTTGAATTTATTGGAAATGGTGATCTGATAATACATAACTTTGGGGACAATAACTTTACAGGCAATCTTCTGTCATTGCCGTTTCCACGTGATAGTCTGGGAAGGAAAACTGTTTATGCTTATCTTGTAGGTGGGAATAAGCTGACTGGACCATTTCCAGATAGTTTGTTTGAGAAATGTGACGATTTGGGGGGATTGATCTTTAATATTAGCAGCAATAAAATATCTGGTCCATTTTCTGTGACAATTGGTAAGAAGTGTGGTTCTCTCAAATTCTTGGATGCATCTGGTAATCAGATGATTGGGCAGGTACCTGCTAGCTTTGGAGAGCTACTATCTCTGAATCACCTGAACCTAAGTTGGAACAAGTTTCAGTATCAAATACCTACTTCTCTCGGACACATGGCTGATTTGAAGTACCTTTGTTTGGCTGGCAATAACTTTAATGGTTCTATACCTTCTACCTTGGGAAAGTTGAAGTCTTTGGAGTTGCTGGATCTTTCATATAACAATCTTTCGGGTGAAATTCCAATAGATCTTGTTAACTTGAGAGGCCTAAAAGTTCTGCTGCTCAACAATAATTCACTCTCTGGACAGGTTCCCTCTGGTTTAGCAAATGTTACCACACTCTCTGCATTTAATGTGTCATTCAATAATTTGTCTGGTTCCCTGCCATCAAATAACAACATGATTAAATGTAGTGGTGCAATTGGAAATCCTTACCTACGCCCGTGCCATATGTATTCTCTGGCAGTCCCCTCATCCGAAATGCAAGGTTCATATGGTGACCCAAGTAGTTTTGCAGCTTCACCGTCTGGTGTTGCACCCCAAACAAGTGGAGGTGGCAGCTTCAATTCCATTGAGATAGCATCCATTACGTCTGCCTCTGCCATTGTTTCTGTTCTTATTGCTTTGATTATCCTATTTCTATATACACGAAAGTGGAACTCGAGATCTAAAGTTCTTGGCTCAATGAGAAAGGAAGTGACGGTTTTTACTGATATTGGGGTTTCCCTGACGTTTGAGAATGTGGTGCGTGCTACAAGTAATTTCAATGCAAGCAACTGCATTGGCAGTGGAGGGTTTGGGGCAACTTACAAGGCAGAGATCTCGTCAGGAGTGCTGGTTGCAATAAAACGACTTGCTGTAGGTCGATTTCAAGGTGTCCAACAGTTCGATGCAGAAATTAAAACTCTTGGAAGGCTGCGCCATCCAAACCTTGTCACCTTAATTGGTTACCATGCCAGTGAAACAGAGATGTTCCTGATATATAATTATTTGCCTGGAGGTAATTTGGAAAAATTCATCCAGGAGAGGTCTACAAGAGCAGTTGATTGGAGAATTCTTCACAAGATTGCACTGGACATAGCCCGTGCGCTCGCGTATCTTCATGATCAGTGTGTACCACGAGTCCTCCACCGCGATGTGAAACCGAGCAATATACTATTAGATGATGATTTCAATGCTTATCTCTCTGATTTTGGATTGGCCAGGCTTCTTGGGACTTCTGAAACCCATGCTACAACCGGTGTGGCTGGAACTTTCGGCTATGTCGCTCCTGAATATGCCATGACTTGCCGTGTCTCTGATAAAGCAGACGTGTACAGTTACGGTGTGGTGCTTCTCGAGCTACTCTCAGACAAGAAAGCACTAGATCCCTCGTTTTCCTCGTATGGTAATGGTTTTAACATAGTAGCTTGGGCATGTATGCTGCTTCGGCAGGGGCGCGCCAAGGAATTCTTCACGGCAGGGTTATGGGAGGTAGGCCCCCATGATGATTTAGTTGAAGTTTTACATTTGGCAGTTGTTTGTACAGTTGACTCTCTGTCAACTAGGCCGACGATGAAGCAAGTCGTACGACGGCTTAAGCAGCTTCAACCGCCATCATGTTAG 3429 44.07 MGSSSSSFSVIKWFSFCRPTSPILLSKLFLLFSILFFFQSDVIFGDSDKSVLLQFKNALSDPSALLSTWTPTGSDYCFWFGVSCDFNSRVVSLNISGNGGSGNSNAFSCSVSSKFPLYGLGIRRGCVANRGLLIGKLPPVIGNLTQLRTLSLPFHAFEGELPREIFGLENLEVLDLEGNSVTGLLPNDFARLSKLRVLNLAFNKLTGEIPSSLSGCQSLEILNLAGNQLNGTIPQFVGHLRGVYLSFNFFTGSIPSEIGNNCEKLEHLDLSGNFLVSGIPSNLGNCTQLQTLLLYSNMLEEAIPAGIGKLQKLEVLDLSRNSLSGPIPSELGNCLQLSVLVLSNLFNPIPKINYTDGDSPTEELSDDSFNYFAGGIPETITALPKLRILWAPSANLNGRFPSQWGKCESLEMINLAGNYLYGELPSGFSVCNKLQVLDLSSNRLSGELDKNLPVPYMTLFDLSHNHFIGEIPTFCGNDCSPPKFRLNGYLDLDDASSRYLAFFATSIRNATPFEFIGNGDLIIHNFGDNNFTGNLLSLPFPRDSLGRKTVYAYLVGGNKLTGPFPDSLFEKCDDLGGLIFNISSNKISGPFSVTIGKKCGSLKFLDASGNQMIGQVPASFGELLSLNHLNLSWNKFQYQIPTSLGHMADLKYLCLAGNNFNGSIPSTLGKLKSLELLDLSYNNLSGEIPIDLVNLRGLKVLLLNNNSLSGQVPSGLANVTTLSAFNVSFNNLSGSLPSNNNMIKCSGAIGNPYLRPCHMYSLAVPSSEMQGSYGDPSSFAASPSGVAPQTSGGGSFNSIEIASITSASAIVSVLIALIILFLYTRKWNSRSKVLGSMRKEVTVFTDIGVSLTFENVVRATSNFNASNCIGSGGFGATYKAEISSGVLVAIKRLAVGRFQGVQQFDAEIKTLGRLRHPNLVTLIGYHASETEMFLIYNYLPGGNLEKFIQERSTRAVDWRILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDFNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFSSYGNGFNIVAWACMLLRQGRAKEFFTAGLWEVGPHDDLVEVLHLAVVCTVDSLSTRPTMKQVVRRLKQLQPPSC 1142
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 35186442 35189870 - CrPI670011_07g019760.1 Cre07g1976 504557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g1976 1142 Gene3D Phosphorylase Kinase; domain 1 825 938 - -
Cre07g1976 1142 Gene3D Ribonuclease Inhibitor 495 762 IPR032675 -
Cre07g1976 1142 Gene3D Ribonuclease Inhibitor 239 448 IPR032675 -
Cre07g1976 1142 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 259 350 - -
Cre07g1976 1142 SMART LRR_typ_2 623 647 IPR003591 -
Cre07g1976 1142 SMART LRR_typ_2 168 191 IPR003591 -
Cre07g1976 1142 SMART LRR_typ_2 192 216 IPR003591 -
Cre07g1976 1142 SMART LRR_typ_2 237 261 IPR003591 -
Cre07g1976 1142 SMART LRR_typ_2 262 286 IPR003591 -
Cre07g1976 1142 SMART LRR_typ_2 671 695 IPR003591 -
Cre07g1976 1142 SMART LRR_typ_2 310 334 IPR003591 -
Cre07g1976 1142 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 364 448 - -
Cre07g1976 1142 ProSitePatterns Serine/Threonine protein kinases active-site signature. 983 995 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre07g1976 1142 SUPERFAMILY L domain-like 47 345 - -
Cre07g1976 1142 SUPERFAMILY Protein kinase-like (PK-like) 848 1134 IPR011009 -
Cre07g1976 1142 Pfam Leucine rich repeat 170 229 IPR001611 GO:0005515(InterPro)
Cre07g1976 1142 ProSiteProfiles Protein kinase domain profile. 863 1137 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre07g1976 1142 Pfam Leucine rich repeat N-terminal domain 46 85 IPR013210 -
Cre07g1976 1142 Gene3D Ribonuclease Inhibitor 45 238 IPR032675 -
Cre07g1976 1142 ProSitePatterns Protein kinases ATP-binding region signature. 869 891 IPR017441 GO:0005524(InterPro)
Cre07g1976 1142 SUPERFAMILY L domain-like 239 739 - -
Cre07g1976 1142 Gene3D Transferase(Phosphotransferase) domain 1 939 1139 - -
Cre07g1976 1142 SMART serkin_6 863 1141 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre07g1976 1142 CDD STKc_IRAK 869 1137 - -
Cre07g1976 1142 PRINTS Leucine-rich repeat signature 671 684 - -
Cre07g1976 1142 PRINTS Leucine-rich repeat signature 434 447 - -
Cre07g1976 1142 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 519 762 - -
Cre07g1976 1142 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 368 1137 IPR050647 -
Cre07g1976 1142 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 939 1141 - -
Cre07g1976 1142 Pfam Protein kinase domain 866 1064 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre07g1976 1142 ProSiteProfiles Leucine-rich repeat profile. 673 696 IPR001611 GO:0005515(InterPro)
Cre07g1976 1142 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 827 938 - -
Cre07g1976 1142 Pfam Leucine Rich Repeat 433 452 IPR001611 GO:0005515(InterPro)
Cre07g1976 1142 Pfam Leucine Rich Repeat 239 260 IPR001611 GO:0005515(InterPro)
Cre07g1976 1142 Pfam Leucine Rich Repeat 625 647 IPR001611 GO:0005515(InterPro)
Cre07g1976 1142 Pfam Leucine Rich Repeat 312 334 IPR001611 GO:0005515(InterPro)
Cre07g1976 1142 Pfam Leucine Rich Repeat 673 695 IPR001611 GO:0005515(InterPro)
Cre07g1976 1142 Pfam Leucine Rich Repeat 698 718 IPR001611 GO:0005515(InterPro)
Cre07g1976 1142 Pfam Leucine Rich Repeat 650 671 IPR001611 GO:0005515(InterPro)
Cre07g1976 1142 Pfam Leucine Rich Repeat 264 286 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g1976 Cre-Chr7:35186442 Cre05g2494 Cre-Chr5:36345912 3.50E-59 dispersed
Cre09g1746 Cre-Chr9:35817758 Cre07g1976 Cre-Chr7:35186442 5.60E-11 transposed
Cre11g1014 Cre-Chr11:7454804 Cre07g1976 Cre-Chr7:35186442 2.70E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64301 PF00069 Pkinase 9.90E-44 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g1976 - - - 0.0