Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g1995 ATGCCTGCAGACAAACATGATGAGAGACATAATATGATTAAAAATTCTAAAGAAGAGAATTCACCTCCTCCAAAACTAGCAGCAGCAGGAGGTTCATCAAGCTCATCGTTGGCGGCGACCACGCCATGGCTTAGGTTGAAGGATCCGAGGATCGTGCGCGTGTCGCGAGCTTTCGGAGGCAAGGATCGACACAGCAAAGTTTGTACCATAAGAGGGCTGCGCGACAGGCGTGTAAGGCTTTCGGTTTCAACCGCAATTCAGCTCTATGATCTTCAAGACCGGCTTGGGCTTAATCAGCCGAGCAAGGTCGTCGACTGGTTGCTGAACGCCGCCAAGGATGAAATCGACGAACTCCCTCCATTGCCAATCCCATCGGCAAGCCTTGGCCTTCACTATCAATCTATGCTACCACCAACCGTGCACCACCCGCATAGATCGGAGTTCAAAATCAACTGCATCAACAAGGCCGAGGTCGAGGATGAGACCGAATTGGAAAAGCAACAGAAATCAAATAATAATTCTAATAATCCCTCTCATCCTTCTTCCTTCTCAGCCCTTTTGAACAATGTGTCTGCCCCTCCATTTGGGTTTTATTGGGATCATAATCCTCCATCATCATCAACATCATCAACAACAACAAATAATCTCCCATTTCTTACATCTCAACAACCTCAGGATAATAATAATCTTCATAACTTCAATCATCTCAATTTGTGTTTGCCTTCCCCTTTGTCTCTTGAGTTCAATCACTTGCACCAAAATTTCTTCATTAACAATAATTCTCTCAATAATACACCTCCTAATTTCCACCCCGCTGTTAGGCCTTTTCATTTTAGTATGGCTACCAAATTCCTTTCTCAAGACAAGAATAACAATAATAATGCAGATAATCCTCCAAATAAGGATCATGGCTTTGCTTCTGATGAATGA 930 43.76 MPADKHDERHNMIKNSKEENSPPPKLAAAGGSSSSSLAATTPWLRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVSTAIQLYDLQDRLGLNQPSKVVDWLLNAAKDEIDELPPLPIPSASLGLHYQSMLPPTVHHPHRSEFKINCINKAEVEDETELEKQQKSNNNSNNPSHPSSFSALLNNVSAPPFGFYWDHNPPSSSTSSTTTNNLPFLTSQQPQDNNNLHNFNHLNLCLPSPLSLEFNHLHQNFFINNNSLNNTPPNFHPAVRPFHFSMATKFLSQDKNNNNNADNPPNKDHGFASDE 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 35445646 35447148 - CrPI670011_07g019950.1 Cre07g1995 504576

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g1995 309 ProSiteProfiles TCP domain profile. 60 118 IPR017887 -
Cre07g1995 309 MobiDBLite consensus disorder prediction 1 36 - -
Cre07g1995 309 MobiDBLite consensus disorder prediction 1 16 - -
Cre07g1995 309 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 24 275 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:2000032(PANTHER)
Cre07g1995 309 MobiDBLite consensus disorder prediction 168 185 - -
Cre07g1995 309 MobiDBLite consensus disorder prediction 287 309 - -
Cre07g1995 309 Pfam TCP family transcription factor 60 175 IPR017887 -
Cre07g1995 309 MobiDBLite consensus disorder prediction 159 185 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g1995 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1507 Cre-Chr1:28314057 Cre07g1995 Cre-Chr7:35445646 6.30E-31 dispersed
Cre03g1057 Cre-Chr3:9565258 Cre07g1995 Cre-Chr7:35445646 4.60E-24 dispersed
Cre04g2079 Cre-Chr4:38007276 Cre07g1995 Cre-Chr7:35445646 1.60E-24 dispersed
Cre06g2419 Cre-Chr6:32088076 Cre07g1995 Cre-Chr7:35445646 1.40E-33 dispersed
Cre07g1995 Cre-Chr7:35445646 Cre11g2169 Cre-Chr11:33395295 1.70E-19 dispersed
Cre11g1026 Cre-Chr11:7583715 Cre07g1995 Cre-Chr7:35445646 2.00E-11 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre09g1714 . 48 264 TCP Transcription Factor Family AT5G23280 63.4 4.6e-68 255.0
Cre02g1732 . 37 257 TCP Transcription Factor Family AT5G23280 60.3 2.1e-60 229.6
Cre06g0793 . 59 341 TCP Transcription Factor Family AT2G45680 54.5 4.2e-67 252.3
Cre05g2607 . 63 157 TCP Transcription Factor Family AT3G47620 89.7 9.3e-41 165.2
Cre01g1570 . 40 140 TCP Transcription Factor Family AT3G47620 82.2 1.8e-39 161.0
Cre11g1770 . 149 231 TCP Transcription Factor Family AT3G47620 90.4 1.4e-36 151.4
Cre11g1770 . 149 241 TCP Transcription Factor Family AT1G69690 82.8 1.6e-36 150.6
Cre05g1545 . 49 312 TCP Transcription Factor Family AT3G27010 57.0 3.4e-60 229.2
Cre02g1732 . 9 255 TCP Transcription Factor Family AT5G08330 56.3 1.5e-63 240.0
Cre09g1714 . 44 263 TCP Transcription Factor Family AT5G08330 62.2 9.4e-63 237.3
Cre07g1995 . 43 168 TCP Transcription Factor Family AT3G02150 62.1 1.4e-38 157.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006589 2 2 1 2 1 1 2 1 1 1 1 1 2 0 1 2 1 0 2 1 1 1 1 1 1 1 1 3 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54107 PF03634 TCP 5.10E-28 No_clan Cre TF