Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g2003 ATGAGCTTCAAACAAAGTCCAGAACCTTCTTCTTCTGATCTGTCAGATCGGGCTTTTGGTTTCAACCCCACTTATCGTAGTCGATTCAATCAGATCTACTTCACCCTTCTTACTGCTGATTTTTGTGCTACAATTTCTGGGATGAAGAAGGCCTTTGATCAAACTGTTAGAGACTTGAAAAGAGAGGTCAATAAGACCGTGCTCAAAATCCCTAAAATTGAGCAGAAGGTTTTGGATGCCACTAGCAATGAGCCTTGGGGTCCTCATGGATCCCTTCTTGCAGATATAGCACAGGCAACTAGAAATTATCATGAATATCAAATGATCATGGGAATACTCTGGAAGCGGATTAATGATACCGGAAAGAATTGGAGGCATGTCTACAAGGGTTTGACCGTTTTGGAGTACTTGGTGGGTCATGGGTCAGAGCGTGTCATAGATGACATCAGAGAACATGCATATCAGATATCGACCTTATCTGATTTTCAATACATCGACTCCAATGGGAGGGACCAAGGTAACAATGTTAGAAAGAAATCTCAAAATCTTGTTGCCCTTGTAAATGATAAAGAAAGGATCATTGAGGTCAGACAGAAGGCTGCTGCTAACAGGGACAAGTTTCGCAGCCCATCATCTATGGGCAGTATGTATAGACCAAGTTCAGGAGGATATGATGACCGCTATGAAGGACGATATGGAAGCCGTGATGGAGACAGAAATGTTGATTCTTATGGGAGGGAAAGAGATTATGGTTTTAGAGATGATCGTTCTGGCAGAAATGAGGATTCATATGGTCGTGATTATGAAGAACGCTATAACAGAGATGGTTTTAAGGATGATGATTATCGAGGAAGGAGCCGAAGCATTGATGACTATCAGTATGGTTCAAGGAGCAGGAGCTCTGACAGAGATGGAGAACGTACATTTGATGATGATGGTCAAGCTTCTTCTCGCAACAATGGTGCCAGAGCTGACGAGCAAGCTCAGGATGGAAGGCAGCTTGAACGTAAATTTTCAGAACAGAATATTGGTGCTCTGCCAAGTTATGAAGAAGCTGTGAATGAATCTGGAAGCACTGGGCATAGTCAAAGAGATGTAGAAGCTCCAGCAACTACTGCTCCAAGAACTTTTCCTCCGCCCACGCCCAGTACTTCAAGCCAGCTAACTACTCATGCAACCACTGCATCCCCGCCTACCCAGGGACTTGATGGTTCTGATGAATTTGACCCCCGTGGTTCAGTTCCAGTTCCAGCTGCTCCAAATGCCTCGAGTAGTTTGGAGACAAATTTATTTGACTCCTTGGCCTTAGTGCCTGTTGGGCCAGTAACATCCAGTGCAGACTCTGAGAGTCATGTTCAGACAAACTCTGCTGTGGGATCCTATACTCAAACTCAGACTTTTGAAGACCCATTTGGTGACTCCCCTTTTAAAGCAATTTCTTCCTCTGGCGTCCAAGATCAAGCACATTTTCACCGTGGGGAATCATTTTCTGCAGCAACTTACTCCACACCAGACATCCCTGTTCAACCTCAACCGAATTTGCATCACCCTCGTGAAGAAACTCTGCAACATCATAATATTGGTGTACTGGCTGATCTCCTTCCTCCTGAAACTTTACCAGCTGCTGTTTCACAGCCCACATTTACAATATCAAACCAACCAGCACAGCCAAATTTTCAAGCTGCATCTGGCTTGCCTGCACAGCCAAATTCTAACTTGGGGAATTATCAGCAAGATGGAAATACTGGTCCTGTGAATTTTCAAAATCAAACAGAACCAGGGAGAGAGTTCGGCAATGGGATGTTCGTGGCACAGGGAGGAGTACCAGCTCATGTCAATTCATATATGGCTCCTCCAAGTGCTGGACCTAATACCCAGCCCAACAATTTTGGAACAACTCATAATGGTTCTGCAGCTCCCACGAGTTCTCATGTCACGCTTCAAACTACAAGACCGCCTGCTCAGCTTGCTAGTGGAAACTTCAATCCGCCACACGGTTCAGTAGCTTCTCAAGTATCTTACCAAGCCTCAAATTTTCCTGTTGTAAAATCCAACTTTGAGGTTATGGGTAGTTTTAATCCTCAGGCAGGAAACTACACAATGACTTCCCAGCAAATTCCTCCAGCCGGATCACTTTCAACTGCATCTCAAGCTTCGAAGAATAAGTTTGAAACCAAGTCCACAGTATGGTCTGACACATTAAGCAGAGGGCTAGTCAATTTAAACATATCTGGACCTAAAGCAAACCCAATGGCGGACATCGGTGTTGATTTCGAAGCCCTCAATAGGAAGGAGAAGAGGATGGAGAAGCCTAGTACAGCTCCAGTGATATCTACCATTAACATGGGTAAAGCTATGGGATCTGGTTCTGGGATAGGCCGAGCCGGTGCTAGTGCACTAAGGCCACCTCCAAATGCAATGTCAGGTTCCGGTTCCGGTTCGGGCATGGGAATGGGCATGGGCATGGGCATGGGCATGAACCCCAATCTTGGCATGGGCATGGGCATGAGAGGCTATGGAGGTATGAATCAACCCATGGGTGGCATGGGGATGAATATGGGCATGGGGCAACAAGGAATCCAAATGCAGCAACCTCGAGCGAACATGCCCGGTGTATACAACCCGATGATGGGTGCTGGTGGTTATGCTCCTCAACAGCCACCATACGGCAGTTACCGATGA 2682 45.86 MSFKQSPEPSSSDLSDRAFGFNPTYRSRFNQIYFTLLTADFCATISGMKKAFDQTVRDLKREVNKTVLKIPKIEQKVLDATSNEPWGPHGSLLADIAQATRNYHEYQMIMGILWKRINDTGKNWRHVYKGLTVLEYLVGHGSERVIDDIREHAYQISTLSDFQYIDSNGRDQGNNVRKKSQNLVALVNDKERIIEVRQKAAANRDKFRSPSSMGSMYRPSSGGYDDRYEGRYGSRDGDRNVDSYGRERDYGFRDDRSGRNEDSYGRDYEERYNRDGFKDDDYRGRSRSIDDYQYGSRSRSSDRDGERTFDDDGQASSRNNGARADEQAQDGRQLERKFSEQNIGALPSYEEAVNESGSTGHSQRDVEAPATTAPRTFPPPTPSTSSQLTTHATTASPPTQGLDGSDEFDPRGSVPVPAAPNASSSLETNLFDSLALVPVGPVTSSADSESHVQTNSAVGSYTQTQTFEDPFGDSPFKAISSSGVQDQAHFHRGESFSAATYSTPDIPVQPQPNLHHPREETLQHHNIGVLADLLPPETLPAAVSQPTFTISNQPAQPNFQAASGLPAQPNSNLGNYQQDGNTGPVNFQNQTEPGREFGNGMFVAQGGVPAHVNSYMAPPSAGPNTQPNNFGTTHNGSAAPTSSHVTLQTTRPPAQLASGNFNPPHGSVASQVSYQASNFPVVKSNFEVMGSFNPQAGNYTMTSQQIPPAGSLSTASQASKNKFETKSTVWSDTLSRGLVNLNISGPKANPMADIGVDFEALNRKEKRMEKPSTAPVISTINMGKAMGSGSGIGRAGASALRPPPNAMSGSGSGSGMGMGMGMGMGMNPNLGMGMGMRGYGGMNQPMGGMGMNMGMGQQGIQMQQPRANMPGVYNPMMGAGGYAPQQPPYGSYR 893
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 35522198 35530149 - CrPI670011_07g020030.1 Cre07g2003 504584

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g2003 893 ProSiteProfiles ENTH domain profile. 65 197 IPR013809 -
Cre07g2003 893 MobiDBLite consensus disorder prediction 618 644 - -
Cre07g2003 893 MobiDBLite consensus disorder prediction 352 366 - -
Cre07g2003 893 PANTHER EPSIN/ENT-RELATED 48 824 - GO:0005543(PANTHER)|GO:0005768(PANTHER)|GO:0005886(PANTHER)|GO:0006897(PANTHER)|GO:0030125(PANTHER)|GO:0030276(PANTHER)
Cre07g2003 893 MobiDBLite consensus disorder prediction 351 423 - -
Cre07g2003 893 MobiDBLite consensus disorder prediction 549 591 - -
Cre07g2003 893 FunFam Clathrin interactor 1 63 210 - -
Cre07g2003 893 MobiDBLite consensus disorder prediction 199 334 - -
Cre07g2003 893 MobiDBLite consensus disorder prediction 465 485 - -
Cre07g2003 893 Gene3D - 70 209 IPR008942 -
Cre07g2003 893 MobiDBLite consensus disorder prediction 224 313 - -
Cre07g2003 893 Pfam ENTH domain 72 193 IPR013809 -
Cre07g2003 893 MobiDBLite consensus disorder prediction 382 401 - -
Cre07g2003 893 MobiDBLite consensus disorder prediction 616 644 - -
Cre07g2003 893 CDD ENTH 73 189 - -
Cre07g2003 893 SMART enth_2 71 197 IPR013809 -
Cre07g2003 893 SUPERFAMILY ENTH/VHS domain 70 209 IPR008942 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g2003 K12471 - - csv:101208671 1368.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g2003 Cre-Chr7:35522198 Cre08g0398 Cre-Chr8:13176899 4.30E-129 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1118 . . . . . . . . . . . Cma14g01498 . Car14g01330 . . Cpe03g01258 Bhi01g02630 . . . Hepe05g1275 . . . . . . . . . . . . . . . . Cme07g01854 . . . . . . . . . . Cmo14g01533 . . . . . . . . . . . . . Cla07g01582 Cam07g1679 Cec07g1774 Cco07g1737 Clacu07g1663 Cmu07g1629 Cre07g2003 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003028 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 2 2 1 1 12 1 2 53