Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g2015 ATGTACCAATCAACTTCTTCCTCTTCTTCCACTCAGAAATCCATGGCCTCCGCCCACGGCGGCGCCGGTCTTGGTGGCGGCGCCGGTCTCACTCGGTACGGTTCGGCGCCTGGATCTCTCCTGACCACGGCGGTCGATTCCGTGATTGGAAGTCGGCAACCGGACTCCGCCGCCACGCTCCGCGGGCCGCCCTCGTTCGGCGGCCACTACTTCTCCTCCGCCGATTCCTCCGTCGTGGAGTCGTCAAGGAAGGTAGTTCAGTCGTCGTCTACTTCCAACGATCTGAAATCATCGTCGTCCACCGCCGCCGCCTTGCATAGGTCATACGGAATCAACGATTTGGCGTTAGGGGATTTCTCGACAGGTAGAAATTTCAATAGCAATGGTGGTCAATCCTCTTCCTCTTCGCCGTTGGTTCGCCAGAGAAGCTCGCCGGCTGGATTTCTCGGCCATCTCTCCGTTGCCGAAGCAAACGGAGGGTTTTCATTGACAATGGGAGGTGGTGGAAATGGAGTAGGAAGTGGAAATGGAGTAGGAAGACTAAAGTCTCAAATGAGCTTCAGTGGGCAGGATAATTCACTTTCCCAAATCTCTGAAATGAGTGAAAGTTTTGTGGAGGCAGCCAATTCCTCAAGCAATGGCCTTCAAAGCAACACCAATTCCACACATTCTTTTGGCCCCTCTGCCTTTGCTATGGACTCTTCATGGGACACCTCCAATAATTCCATTGTCTTTGGTGCCCCTCATGCTAAAAGATCCAAGCACCATTCCGATGCCGACTTCTTCACTGGCCTCGAGTCTCAATTTAGCCTGCCACAAACAACTCTAGAAATGGCAGCTGTGGAGAGGTTGCTTCAAATTCCTGAAGATGCTGTTCCTTGTAAGATTCGAGCCAAGCGTGGCTGTGCTACTCACCCTCGGAGTATTGCCGAACGGGAGAGAAGAACTAGAATCAGTGGAAAATTGAAGAAACTTCAAGAGCTTGTTCCCAACATGGATAAGCAAACAAGCTATTCAGACATGTTGGACTTAGCAGTGCAGCATATCAAAGGTCTTCAAAATCAAATTCAGAAGCTTAACAAAGAAGTTGAGAATTGCACCTGTGGAAGCAAAGAATGCTTATAA 1125 50.49 MYQSTSSSSSTQKSMASAHGGAGLGGGAGLTRYGSAPGSLLTTAVDSVIGSRQPDSAATLRGPPSFGGHYFSSADSSVVESSRKVVQSSSTSNDLKSSSSTAAALHRSYGINDLALGDFSTGRNFNSNGGQSSSSSPLVRQRSSPAGFLGHLSVAEANGGFSLTMGGGGNGVGSGNGVGRLKSQMSFSGQDNSLSQISEMSESFVEAANSSSNGLQSNTNSTHSFGPSAFAMDSSWDTSNNSIVFGAPHAKRSKHHSDADFFTGLESQFSLPQTTLEMAAVERLLQIPEDAVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYSDMLDLAVQHIKGLQNQIQKLNKEVENCTCGSKECL 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 35710948 35718137 - CrPI670011_07g020150.1 Cre07g2015 504596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g2015 374 FunFam Transcription factor bHLH130 family 303 371 - -
Cre07g2015 374 MobiDBLite consensus disorder prediction 1 17 - -
Cre07g2015 374 CDD bHLH_AtbHLH_like 307 359 IPR045239 -
Cre07g2015 374 SMART finulus 308 358 IPR011598 GO:0046983(InterPro)
Cre07g2015 374 MobiDBLite consensus disorder prediction 1 29 - -
Cre07g2015 374 Coils Coil 342 369 - -
Cre07g2015 374 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 302 352 IPR011598 GO:0046983(InterPro)
Cre07g2015 374 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 94 361 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cre07g2015 374 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 305 366 IPR036638 GO:0046983(InterPro)
Cre07g2015 374 Gene3D - 303 371 IPR036638 GO:0046983(InterPro)
Cre07g2015 374 Pfam Helix-loop-helix DNA-binding domain 308 353 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g2015 Cre-Chr7:35710948 Cre08g0462 Cre-Chr8:15932451 4.60E-08 dispersed
Cre03g1618 Cre-Chr3:32114971 Cre07g2015 Cre-Chr7:35710948 2.20E-30 transposed
Cre08g0028 Cre-Chr8:723099 Cre07g2015 Cre-Chr7:35710948 4.60E-25 transposed
Cre09g0412 Cre-Chr9:4011569 Cre07g2015 Cre-Chr7:35710948 2.30E-33 transposed
Cre10g1846 Cre-Chr10:33040593 Cre07g2015 Cre-Chr7:35710948 8.00E-37 transposed
Cre03g1905 Cre-Chr3:36090427 Cre07g2015 Cre-Chr7:35710948 1.10E-07 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54109 PF00010 HLH 1.00E-08 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g2015 - - - 0.0