Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre07g2041 | ATGTTCCAAGGGTTTGTTTTCGGCATTAATGACGTGTACGGCCACGAATTCTCCGCCATGTCTCTGCCGGAATTCACTAACAGCCAGTTAACGGAACAAATCGACGACACAGCGGTGTTCAGCTCCGACGAGTTTCGAATGTACTCGTACAAGATCCAACGGTGTCCAAGAAACCGCAGCCACGATTGGACGGAATGTCCGTACGCCCACCGCGGCGAGAAGGCGCAACGCCGTGACCCACGGCGGTTCAACTACACTGCTGTCGCCTGCCCGGCTTTCCGGTCGGGCAGCTGCCCCAAGGGAGATTTTTGTGAATTTGCTCATGGGGTTTTCGAGTACTGGCTTCACCCGGCCCGTTACCGGACCCGGGCTTGTAATGCTGGCCGGTTTTGCCAACGGAAAGTTTGTTTTTTCGCTCACTCGCCGGAGGAGCTCCGGCCAGAGACCAAACAGAAATTTAATCTTAATGCTCACCGGCTGCGTGGGGCGGTCTCCACCGTTGAATGTCTGCCGGAGGAAAAAATTGACGGGGTTTCGGAAATTCCGGTGAGGGAGAACGGCGGCGGACGGGGAAATGAACGGAGTTTTGGGTTGGAGGTGTCGGAGTTGGACTCGCCGCATATTGACTGGATATCGGAATTGTTGCAGTAA | 651 | 55.15 | MFQGFVFGINDVYGHEFSAMSLPEFTNSQLTEQIDDTAVFSSDEFRMYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELRPETKQKFNLNAHRLRGAVSTVECLPEEKIDGVSEIPVRENGGGRGNERSFGLEVSELDSPHIDWISELLQ | 216 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 36029384 | 36030034 | - | CrPI670011_07g020410.1 | Cre07g2041 | 504622 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre07g2041 | 216 | ProSiteProfiles | Zinc finger C3H1-type profile. | 84 | 111 | IPR000571 | GO:0046872(InterPro) | |
Cre07g2041 | 216 | PANTHER | UNKEMPT FAMILY MEMBER | 36 | 150 | IPR045234 | - | |
Cre07g2041 | 216 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 88 | 109 | IPR000571 | GO:0046872(InterPro) | |
Cre07g2041 | 216 | Gene3D | - | 78 | 155 | - | - | |
Cre07g2041 | 216 | SMART | c3hfinal6 | 84 | 110 | IPR000571 | GO:0046872(InterPro) | |
Cre07g2041 | 216 | SMART | c3hfinal6 | 119 | 142 | IPR000571 | GO:0046872(InterPro) | |
Cre07g2041 | 216 | SUPERFAMILY | CCCH zinc finger | 83 | 114 | IPR036855 | GO:0046872(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre07g2041 | Cre-Chr7:36029384 | Cre11g0685 | Cre-Chr11:3909882 | 9.40E-46 | dispersed | |
Cre03g1859 | Cre-Chr3:35516935 | Cre07g2041 | Cre-Chr7:36029384 | 7.50E-46 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54113 | PF00642 | zf-CCCH | 1.20E-05 | CL0537 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre07g2041 | - | - | - | 0.0 |