Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g2041 ATGTTCCAAGGGTTTGTTTTCGGCATTAATGACGTGTACGGCCACGAATTCTCCGCCATGTCTCTGCCGGAATTCACTAACAGCCAGTTAACGGAACAAATCGACGACACAGCGGTGTTCAGCTCCGACGAGTTTCGAATGTACTCGTACAAGATCCAACGGTGTCCAAGAAACCGCAGCCACGATTGGACGGAATGTCCGTACGCCCACCGCGGCGAGAAGGCGCAACGCCGTGACCCACGGCGGTTCAACTACACTGCTGTCGCCTGCCCGGCTTTCCGGTCGGGCAGCTGCCCCAAGGGAGATTTTTGTGAATTTGCTCATGGGGTTTTCGAGTACTGGCTTCACCCGGCCCGTTACCGGACCCGGGCTTGTAATGCTGGCCGGTTTTGCCAACGGAAAGTTTGTTTTTTCGCTCACTCGCCGGAGGAGCTCCGGCCAGAGACCAAACAGAAATTTAATCTTAATGCTCACCGGCTGCGTGGGGCGGTCTCCACCGTTGAATGTCTGCCGGAGGAAAAAATTGACGGGGTTTCGGAAATTCCGGTGAGGGAGAACGGCGGCGGACGGGGAAATGAACGGAGTTTTGGGTTGGAGGTGTCGGAGTTGGACTCGCCGCATATTGACTGGATATCGGAATTGTTGCAGTAA 651 55.15 MFQGFVFGINDVYGHEFSAMSLPEFTNSQLTEQIDDTAVFSSDEFRMYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELRPETKQKFNLNAHRLRGAVSTVECLPEEKIDGVSEIPVRENGGGRGNERSFGLEVSELDSPHIDWISELLQ 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 36029384 36030034 - CrPI670011_07g020410.1 Cre07g2041 504622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g2041 216 ProSiteProfiles Zinc finger C3H1-type profile. 84 111 IPR000571 GO:0046872(InterPro)
Cre07g2041 216 PANTHER UNKEMPT FAMILY MEMBER 36 150 IPR045234 -
Cre07g2041 216 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 88 109 IPR000571 GO:0046872(InterPro)
Cre07g2041 216 Gene3D - 78 155 - -
Cre07g2041 216 SMART c3hfinal6 84 110 IPR000571 GO:0046872(InterPro)
Cre07g2041 216 SMART c3hfinal6 119 142 IPR000571 GO:0046872(InterPro)
Cre07g2041 216 SUPERFAMILY CCCH zinc finger 83 114 IPR036855 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g2041 Cre-Chr7:36029384 Cre11g0685 Cre-Chr11:3909882 9.40E-46 dispersed
Cre03g1859 Cre-Chr3:35516935 Cre07g2041 Cre-Chr7:36029384 7.50E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54113 PF00642 zf-CCCH 1.20E-05 CL0537 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g2041 - - - 0.0