Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g2068 ATGATGTTAGTAAGGATGGGAGAACTCTATCTTACAATTCTAATACTGGCTTGCCTTCATTATCTTGCACTGTCTGATTTTCAAGGTGATGCACTCTTTGCATTGAAGAATGCATTGAATGCAACAGCAAATCAGCTCACAGATTGGAACCCAAATCAAGTCAATCCATGTACTTGGTCCAATGTTATATGTAGTGGAAGCAATGTGATCTCTGTATCCTTGTCCACAATGGGATTTACTGGAACCTTGTCTCCACGAATTGGACTTCTAAAATCACTTTCAACCCTGATTTTGCAGGGAAATTACATAACTGGAGAGATACCTAAGGATTTTGGAAACCTGACAAATTTGGTTAGTTTGGATTTGGGAAATAACAGCCTAACTGGCCAAATACCATCGTCCCTTGGTAACCTTAAGAAACTACAGTTCCTAACTCTGAGTCAAAATCGTCTAACGGGGACTATTCCAGAGTCACTTTCAACCCTTCCTAGCTTGATAAATCTTCTGCTTGATTCAAATGATCTCAGTGGTCCAATTCCGCAGCAGTTATTTCAAGTTCCAAAATTCAACTTTTCTGCAAACAAGTTAAATTGTGGCGGGAAGTCTCTTCATGCCTGTGCTTCAGACAGTACAAACTCAGGTTCTTCAAATAAACCCAAGGTTGGCCTTATAGTTGGAATAATTGCTGGGTTTACCGTTGCTCTTCTTTTGGTGGGAGTATTATTTTTCTTGTCCAAGGGTAGATATAAAAGCTACAAGCGCGAAGTGTTTGTAGATGTTGCAGGTGAAGTTGATCGAAGAATTGCATTTGGTCAGCTGAAAAGATTTGCATGGAGGGAACTACAGCTAGCCACAGACAACTTTAGTGAGAAAAATGTTTTAGGACAAGGAGGCTTTGGAAAGGTGTACAAAGGGGTGCTTGCAGATGGCACCAAAGTTGCTGTGAAACGGTTGACTGATTATGAAAGTCCAGGGGGAGATGCTGCTTTTCAGCGTGAAGTTGAGATGATTAGTGTAGCTGTTCATAGAAATCTGTTGCGTCTCATTGGGTTCTGTACAACTCAGACAGAACGCCTATTGGTGTATCCCTTTATGCAGAACTTGAGTGTTGCCTACCGTCTTCGAGAACTTAAGCCCGGAGAGGCTGTTCTAGATTGGCCTACTCGGAAACGGGTGGCATTGGGCACAGCTCGTGGTTTAGAGTATCTTCATGAACATTGCAACCCAAAGATTATTCATCGAGATGTCAAGGCAGCTAATGTATTGCTTGATGAAGATTTTGAAGCAGTTGTCGGCGATTTTGGCTTAGCGAAGTTGGTTGATGTTAGAAAGACCAATGTCACTACTCAAGTTCGAGGGACAATGGGTCACATAGCACCGGAGTACTTATCTACTGGAAAATCATCCGAAAGGACTGATGTTTTTGGTTATGGTATCATGCTTTTAGAACTTGTAACAGGGCAACGTGCAATCGACTTCTCACGCTTAGAAGAAGAAGACGATGTTTTACTGCTCGACCATGTTAAGAAACTAGAAAGGGAGAAACGACTTGATGCCATTGTCGATCGAAATCTAAAAAACTACAACATTCAAGAGGTGGAGATGATGATTCAAGTTGCATTGCTGTGTACACAGCCATGCTCGGATGACCGCCCAGCAATGTCACAAGTCGTTCGGATGCTCGAGGGAGAGGGATTGGCAGAGAGGATGCAATCCAGTTGTCTGGTGGAAGATGAGGTCAGTTTTATTGGTACCATCCTTCAAGCTTATTATACAAAACTTAAGCAGCTCAGAAATCCTTGCTTTTCCATCTCCCAGTTTAAGAATCTTGAGGATAATTTTCTTCCTCTCTCTTCTGCCCCAAATCTACTTCTCTTATTCCCAGAAATTGAAATGACTCAATTAATCTTTTTTGTGTGGATTTCTTAA 1929 41.68 MMLVRMGELYLTILILACLHYLALSDFQGDALFALKNALNATANQLTDWNPNQVNPCTWSNVICSGSNVISVSLSTMGFTGTLSPRIGLLKSLSTLILQGNYITGEIPKDFGNLTNLVSLDLGNNSLTGQIPSSLGNLKKLQFLTLSQNRLTGTIPESLSTLPSLINLLLDSNDLSGPIPQQLFQVPKFNFSANKLNCGGKSLHACASDSTNSGSSNKPKVGLIVGIIAGFTVALLLVGVLFFLSKGRYKSYKREVFVDVAGEVDRRIAFGQLKRFAWRELQLATDNFSEKNVLGQGGFGKVYKGVLADGTKVAVKRLTDYESPGGDAAFQREVEMISVAVHRNLLRLIGFCTTQTERLLVYPFMQNLSVAYRLRELKPGEAVLDWPTRKRVALGTARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRLEEEDDVLLLDHVKKLEREKRLDAIVDRNLKNYNIQEVEMMIQVALLCTQPCSDDRPAMSQVVRMLEGEGLAERMQSSCLVEDEVSFIGTILQAYYTKLKQLRNPCFSISQFKNLEDNFLPLSSAPNLLLLFPEIEMTQLIFFVWIS 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 36241445 36257382 + CrPI670011_07g020680.1 Cre07g2068 504649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g2068 642 ProSitePatterns Protein kinases ATP-binding region signature. 294 316 IPR017441 GO:0005524(InterPro)
Cre07g2068 642 Gene3D Ribonuclease Inhibitor 26 207 IPR032675 -
Cre07g2068 642 SMART serkin_6 288 561 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre07g2068 642 FunFam Somatic embryogenesis receptor-like kinase 1 365 580 - -
Cre07g2068 642 Pfam Leucine rich repeat 92 151 IPR001611 GO:0005515(InterPro)
Cre07g2068 642 ProSiteProfiles Protein kinase domain profile. 288 566 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre07g2068 642 Pfam Leucine rich repeat N-terminal domain 27 65 IPR013210 -
Cre07g2068 642 ProSitePatterns Serine/Threonine protein kinases active-site signature. 411 423 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre07g2068 642 FunFam Somatic embryogenesis receptor kinase 1 257 364 - -
Cre07g2068 642 Gene3D Transferase(Phosphotransferase) domain 1 365 579 - -
Cre07g2068 642 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 12 573 - -
Cre07g2068 642 SUPERFAMILY Protein kinase-like (PK-like) 268 562 IPR011009 -
Cre07g2068 642 Gene3D Phosphorylase Kinase; domain 1 257 364 - -
Cre07g2068 642 FunFam Putative LRR receptor-like serine/threonine-protein kinase 25 208 - -
Cre07g2068 642 Pfam Protein tyrosine and serine/threonine kinase 291 561 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre07g2068 642 SUPERFAMILY L domain-like 28 196 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g2068 Cre-Chr7:36241445 Cre08g1725 Cre-Chr8:29510445 2.20E-119 dispersed
Cre07g2068 Cre-Chr7:36241445 Cre07g2069 Cre-Chr7:36257414 8.60E-212 tandem
Cre02g0356 Cre-Chr2:686546 Cre07g2068 Cre-Chr7:36241445 1.00E-162 transposed
Cre07g1298 Cre-Chr7:27273395 Cre07g2068 Cre-Chr7:36241445 7.20E-131 transposed
Cre08g0278 Cre-Chr8:7409007 Cre07g2068 Cre-Chr7:36241445 1.20E-130 transposed
Cre09g1509 Cre-Chr9:30392926 Cre07g2068 Cre-Chr7:36241445 4.40E-106 transposed
Cre10g1082 Cre-Chr10:21439598 Cre07g2068 Cre-Chr7:36241445 9.30E-123 transposed
Cre03g1825 Cre-Chr3:35163419 Cre07g2068 Cre-Chr7:36241445 4.30E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64304 PF00069 Pkinase 2.00E-42 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g2068 - - - 0.0