Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0009 ATGTCTCGAAGATCGACCAGGTTAGTGGAAAAGGCGAATGAATATTTAGAGAAACCCACAAATAGTGAAACTGCAAAATCATCCAGAACTAAGAGATATGGTGTATCTAAGGGAAACCTTAAATCTTCTAGGAGTCAGAAGTGGACACGAAATAATGAGATTAAGGTAAATGAAGTTACGTGTCCTCCATCTTTTGAGCAATTAGAGGGAAAGAAGAGAAAGACATCTAGTAAGAGGTCAATCACAAGAGCAACTACTTCAAAGAAGTTTAGGTCCGAGGAGGGGATCAACAAAAAAGGGAGTGGGAGATTAAGGAAGAGGGTGTATTATCAAAAAGTGGTTTTTGATGGTGGTGAATTTGAGGTTGGGGATGATGTTTATGTGAGGAGGAGAGAAGATGCAAGCTCTGACGATGAAGACCCTGAAGTTGAGGAGTGTAGAGTGTGCTTTAAGTCTGGAAAGGCTATAATGATCGAGTGTGATGATTGTCTTGGTGGTTTTCATTTGAAGTGTTTGAAGCCGCCATTGAAGGTAATCCCTGAGGGGGATTGGATTTGTGGGTTTTGTGAGGCTGCTAAAATGGGCAAAGAGGTTCAGTTTCCAAAGCCTCCAGAGGGTAAAAAACGGGTTAGGACAATGAGAGAGAAGCTTCTAGCAGGCGATTTGTGGGCTGCTCACATTGAAAGTTTATGGAAAGAAGTGAATGGTAACCATCAGTGTAAGGTTAGATGGTATATAATCCCAGAAGAGACCGCAGCTGGAAGGCAACCACATAACTTGAAGAGAGAGCTTTATTTAACTAATGATTATGCAGATATTGAGATGGAATCACTTCTTAGACTGTGTGAAGTCATGAATCCTAAAGACTATTATAATGCCAAGGAAGGGGATGATATATTTTTATGTGAGTATGAATATGACGTTCGTTGGCATAGTTTCAAGAGATTAGCTGAAATTGATAAAGAAGAGGATAGCGAAGCAGTTGATAGTGACAAAGAGTGGAAGTTGGACCAGAATGCAGACTCTGATTCAGACGGTGATGTGGAATATGAAGAAGAGAGAGCACACATTTTACAATCTCGAAACTACTCAAGATCAACCCATGAATTGGCCGCAAATTCAAGGAAAGGACGATTTTGTGGACTACAAAAGATAGGAGCTAAGAAGATCCCAGAGCATATAAGATGCCACAAACAGACTGAATTGGAAAGAGCAAAGGCAACCCTCATGTTGGCGTCCCTACCCAAGTCTCTACCGTGTAGAAATAAAGAAATTGAGGAGATAACTACATTTATAGAAAGTGCTTTATGTGATGATCAATGCTTGGGGCGATGCTTGTACATCCATGGTGTTCCAGGAACAGGCAAGACAATGAGTGTGCTGTCAGTAATGAGGAACTTGCGGGCTAAAGTTGATGCAGGAAATATAAGGCCTCATTGCTTTGTGGAGGTTAATGGTCTAAAGCTGGCAGCGCCAGAAAATATATACAGGGTTATACATGAAGCATTAACCGGGTATAGGGTTAATTGGAAAAAGGCGCTTCAGTTGTTGACCAAACGGTTTTCAGATGTAAATAATTGCAGGGATGATGAGCGACCTTGCATTCTGCTCATTGATGAACTTGATCTTCTTGTAACAAGAAACCAGTCAGTTCTATACAACATTCTTGATTGGCCTACAAAGCCACAAGCAAAGTTGATTGTGATAGGAATTGCAAATACCATGGACCTACCTGAGAAGTTGCTTCCTCGAATTTCAAGCCGAATGGGTATTGAAAGGCTTTGTTTCGGCCCTTATAACTATCAGCAACTTCAAGAAATCATTTCGAGCCGCCTTGAAGGAATCAATGCGTTTGAGAAACAAGCTATTGAATTCGCATCGAGAAAGGTAGCTGCTATTTCAGGAGATGCACGCCGTGCTCTGGAGATATGTAGGCGTGCAGCTGAAATTACGGATTATCATTTAAAGAAGCAGCTGAGTTTGACTTCCAACACTGCGAAAACACATGTAGGAATAACTGAGGTGGAAGCAGCGATTCAAGAAATGTTTCAAGCACCTCATATTCAAACATTCACCACTGTTGAATTCATTCAAACCGATGAGAATCGAGAGGTCGGTTTCCGGCATTGGTTTGGGATCAGAATCGATGTCGCCCGACCGCTGCTTACCCCTACGCATGCCTATTCTCCTAAGCGCATGAGGGAATTGGGTCTTGAGGAATTGAGGCTTGACTGGGAGCTTGAGGAGGAAAGGATTGAGATGAGGGAGTGGAGTCAGACGATTATTGAGATCTGGTGTCATGTGGTGAGTGGCACCCGAGTCCATGTACCAAGCATCATCAAGGTGATGAAGAGTTGTTCTAAGCAGAGTAAGATCTTCTTGACAGCCATGGTGCACGAACTTTATAAAACTGGAATGGGTGAAGCAACCTTTGAAAAGCTTGCCATGACTGTCTCGTATCTTTGTACAAGCAATGGGGAGGAATTTCCTGGATATGATGCTCTCTTGAAAGTTGGCTGTAGGCTTGGTGAGTGCAGAATTATTTTATGTGAATCAGGGGCTAAACACCGGTTGCAAAAGTTACAGCTTAATTTTCCAAGTGATGACGTCTCATTTGCACTGAAAGACAAAGTGGAAGCAATGGCAGAACGCATAACAAAGATGCACCGTGAGGTAGTTGAGCATTTGGAGGCTGCTGCTTCCTACAAAAACCGCTGGCTTACAGTGACAAGCATCACCACCTGA 2745 42.51 MSRRSTRLVEKANEYLEKPTNSETAKSSRTKRYGVSKGNLKSSRSQKWTRNNEIKVNEVTCPPSFEQLEGKKRKTSSKRSITRATTSKKFRSEEGINKKGSGRLRKRVYYQKVVFDGGEFEVGDDVYVRRREDASSDDEDPEVEECRVCFKSGKAIMIECDDCLGGFHLKCLKPPLKVIPEGDWICGFCEAAKMGKEVQFPKPPEGKKRVRTMREKLLAGDLWAAHIESLWKEVNGNHQCKVRWYIIPEETAAGRQPHNLKRELYLTNDYADIEMESLLRLCEVMNPKDYYNAKEGDDIFLCEYEYDVRWHSFKRLAEIDKEEDSEAVDSDKEWKLDQNADSDSDGDVEYEEERAHILQSRNYSRSTHELAANSRKGRFCGLQKIGAKKIPEHIRCHKQTELERAKATLMLASLPKSLPCRNKEIEEITTFIESALCDDQCLGRCLYIHGVPGTGKTMSVLSVMRNLRAKVDAGNIRPHCFVEVNGLKLAAPENIYRVIHEALTGYRVNWKKALQLLTKRFSDVNNCRDDERPCILLIDELDLLVTRNQSVLYNILDWPTKPQAKLIVIGIANTMDLPEKLLPRISSRMGIERLCFGPYNYQQLQEIISSRLEGINAFEKQAIEFASRKVAAISGDARRALEICRRAAEITDYHLKKQLSLTSNTAKTHVGITEVEAAIQEMFQAPHIQTFTTVEFIQTDENREVGFRHWFGIRIDVARPLLTPTHAYSPKRMRELGLEELRLDWELEEERIEMREWSQTIIEIWCHVVSGTRVHVPSIIKVMKSCSKQSKIFLTAMVHELYKTGMGEATFEKLAMTVSYLCTSNGEEFPGYDALLKVGCRLGECRIILCESGAKHRLQKLQLNFPSDDVSFALKDKVEAMAERITKMHREVVEHLEAAASYKNRWLTVTSITT 914
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 300402 332616 + CrPI670011_08g000090.1 Cre08g0009 504927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0009 914 Gene3D - 403 592 IPR027417 -
Cre08g0009 914 MobiDBLite consensus disorder prediction 327 342 - -
Cre08g0009 914 FunFam Origin recognition complex subunit 1 209 401 - -
Cre08g0009 914 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 200 IPR013083 -
Cre08g0009 914 ProSiteProfiles BAH domain profile. 202 317 IPR001025 GO:0003682(InterPro)
Cre08g0009 914 Pfam CDC6, C terminal winged helix domain 782 873 IPR015163 -
Cre08g0009 914 SUPERFAMILY FYVE/PHD zinc finger 132 195 IPR011011 -
Cre08g0009 914 SMART PHD_3 145 190 IPR001965 -
Cre08g0009 914 FunFam Origin recognition complex subunit 1 594 684 - -
Cre08g0009 914 ProSitePatterns Zinc finger PHD-type signature. 146 189 IPR019786 -
Cre08g0009 914 MobiDBLite consensus disorder prediction 65 94 - -
Cre08g0009 914 Pfam AAA lid domain 619 655 IPR041083 -
Cre08g0009 914 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 412 654 IPR027417 -
Cre08g0009 914 Pfam BAH domain 226 315 IPR001025 GO:0003682(InterPro)
Cre08g0009 914 ProSiteProfiles Zinc finger PHD-type profile. 143 192 IPR019787 -
Cre08g0009 914 FunFam Origin recognition complex subunit 1 141 208 - -
Cre08g0009 914 FunFam Origin recognition complex subunit 1 399 597 - -
Cre08g0009 914 Pfam PHD-finger 146 189 IPR019787 -
Cre08g0009 914 MobiDBLite consensus disorder prediction 1 47 - -
Cre08g0009 914 MobiDBLite consensus disorder prediction 18 47 - -
Cre08g0009 914 Gene3D - 593 684 - -
Cre08g0009 914 MobiDBLite consensus disorder prediction 1 17 - -
Cre08g0009 914 Gene3D - 213 402 IPR043151 -
Cre08g0009 914 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 195 694 IPR050311 GO:0003688(PANTHER)|GO:0005664(PANTHER)|GO:0006270(PANTHER)|GO:0033314(PANTHER)
Cre08g0009 914 MobiDBLite consensus disorder prediction 327 349 - -
Cre08g0009 914 SMART BAH_4 177 317 IPR001025 GO:0003682(InterPro)
Cre08g0009 914 Pfam ATPase family associated with various cellular activities (AAA) 447 591 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cre08g0009 914 SMART AAA_5 442 595 IPR003593 GO:0016887(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2271 Cre-Chr2:36301411 Cre08g0009 Cre-Chr8:300402 1.80E-26 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54117 PF00004 AAA 3.80E-19 CL0023 Cre TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0009 K02603 - csv:101214082 1243.02