Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0012 ATGCTCCGAACACTATTCCTTCCTACAATTGCTCCAATTTCTCGTGTGAATCATCATTTTCTCCCTAATTGCTTGAATCCGGTTGTGTTTGTGGATTGTGTCCCCATCTCCCAACAGGATATTTTTAGGATATTTGTGTTTGGACGTCATCCATTGGATGCACGGCAAATATTGTCTTGGCTAGAGAGAGAGAGAATGGGATTGGGGTCTGCCGGAGCGCAGTTGATTTCCGTTCCAGCAACCGGGAGCAGTAGCCGGCACATGGGGACACCATTTCAGCCACCTTGCTTCCGAATTGCTGCTTCCCCTCTCCCTTTTAGAAAATGCAGAAATAAGGATATTTGGAAATGGAAGGGAAAGAGAGGTAAAGTGTGCTATAGCGTAGAGGGCGTGAAGGATAATGAAATAGATGATGAGGGTTGTGAACTTGTGAGTGGAATGGAGCTTTCAATTGGGGAACAACTTCATCATTCAATCCCTGCATATCTCTTTAAGGCAGTCAAGAACAATAATGGAACTGCCATTCTCCTCTTGTCCGACCTCTTTGCCTTTCAACATTCTTCCATTAGAGACTTCGCATATCGTCTTGCTTGCAATGGCTTCAATGTCCTACTTCCAGATTTAATTCACGGAGATCCATGGGAGAAACAGCCAGAACAACTCTCTGCAAAACGAGAGATGCAGAGGATTGCAGAAGACATAGGAATAGTAACAAAATGGTTGGTCGACGAGTTTTCAGCAGCAGGCATCTCGAGGAAGCTTGGGATCATGGGTTTTGGATACGGGGGAGGGCGAGTTATAGATGTTCTAGCTCAAGACGAGGGTGCCTGTTTCTCCATTGGAGCCTCCCTCTATGGTACTGAGGTAGATCCATCTGTTGCTAGCAAAGTCAAGGTTCCTGTGTTGCTCATCTCAGGGGACAATGACCCACTTTGTCCAGTGAGTGTGATGAAGGATTTGGAGAAAGGGATGGGAGAAGGTTCTAAGTTAGTGATATTTGAGGGAAGAGGTCATGGCTTTGTTCACAACCCTGGATCTCCAGAAGAAGATGAAGATGCTGAGCAGGCTTTTCTAATGCTAAGAAATTGGCTGCATCACGGCTTGGTTGCAACTAATATTTAG 1122 45.54 MLRTLFLPTIAPISRVNHHFLPNCLNPVVFVDCVPISQQDIFRIFVFGRHPLDARQILSWLERERMGLGSAGAQLISVPATGSSSRHMGTPFQPPCFRIAASPLPFRKCRNKDIWKWKGKRGKVCYSVEGVKDNEIDDEGCELVSGMELSIGEQLHHSIPAYLFKAVKNNNGTAILLLSDLFAFQHSSIRDFAYRLACNGFNVLLPDLIHGDPWEKQPEQLSAKREMQRIAEDIGIVTKWLVDEFSAAGISRKLGIMGFGYGGGRVIDVLAQDEGACFSIGASLYGTEVDPSVASKVKVPVLLISGDNDPLCPVSVMKDLEKGMGEGSKLVIFEGRGHGFVHNPGSPEEDEDAEQAFLMLRNWLHHGLVATNI 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 361556 363396 - CrPI670011_08g000120.1 Cre08g0012 504930

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0012 373 PANTHER CARBOXYMETHYLENEBUTENOLIDASE HOMOLOG 120 369 IPR042946 GO:0009507(PANTHER)
Cre08g0012 373 Gene3D alpha/beta hydrolase 148 366 IPR029058 -
Cre08g0012 373 Pfam Dienelactone hydrolase family 160 366 IPR002925 GO:0016787(InterPro)
Cre08g0012 373 SUPERFAMILY alpha/beta-Hydrolases 158 366 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0012 K01061 - - csv:101210518 496.123
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1541 . . . . . . . . . . . . . . . . . . . . . . . . Cla08g00018 Cam08g0012 Cec08g0248 Cco08g0059 Clacu08g0031 Cmu08g0027 Cre08g0012 . . . . . . . . . . . . . . . . . . . . . . . . . Bhi06g00287 . . . . . . . . . . . . . Lsi08g00012 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012984 0 1 1 1 0 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 0 2 1 28