Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0028 ATGCAGTCCACAACTGGTGCTGGTGCTACTGGTAGTCGTAGCTCCGGCGGCGGTACCGGCGGTGGCCTCGCTCGCTTCCGCTCTGCCCCTGCCGCCTGGTTGGAAGCGCTTTTGGAGGACGACGAGGAGGACCCTCTCAAGCCCAATCACTGCTTGACTCAGCTTCTCGCCGCCGACTCCTCCGACCTCGACTCTCCCGCTGATCAACCCTTGTTCGACCCCAATCCCTCCCCGGCCTTCCACAGACAGAATAGCTCTCCCGCCGAGTTTCTCGCCGCCTCTGGAATTGGGGAAGGATTTTACACTGCCTATGCTCTCAATTCCTCCCCCACTCTCGACATCTCTCCCACCTCCAAGCGAGCTAGAGAAGTCGACCCCCAAAACTTCTCCCCCAAATTTTCACCTCAACTGAAAAGGGAAGGAAGTGGAGTTTCCAGTTTAATAGACATGGAAATGGAGAAGTTATTGGAGGACTCTGTGCCCTGCCGGGTAAGGGCCAAGCGTGGCTGTGCGACGCATCCTCGGAGCATTGCTGAGAGGGTTCGTAGGACTAGAATTAGTGACAGAATAAGGAAGCTTCAGGAGGTTGTCCCCAACATGGACAAGCAAACAAACACTGCAGATATGTTAGAAGAAGCAGTAGAGTATGTCAAATTCCTTCAAAAGCAAATTCAGGAACTCACGGAGCATCAGCGCAGGTGCAAATGCATGGTGAAGGAATGA 723 54.22 MQSTTGAGATGSRSSGGGTGGGLARFRSAPAAWLEALLEDDEEDPLKPNHCLTQLLAADSSDLDSPADQPLFDPNPSPAFHRQNSSPAEFLAASGIGEGFYTAYALNSSPTLDISPTSKRAREVDPQNFSPKFSPQLKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQEVVPNMDKQTNTADMLEEAVEYVKFLQKQIQELTEHQRRCKCMVKE 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 723099 727005 + CrPI670011_08g000280.1 Cre08g0028 504946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0028 240 FunFam Transcription factor bHLH130 family 171 239 - -
Cre08g0028 240 CDD bHLH_AtbHLH_like 175 227 IPR045239 -
Cre08g0028 240 Coils Coil 210 230 - -
Cre08g0028 240 Gene3D - 171 240 IPR036638 GO:0046983(InterPro)
Cre08g0028 240 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 170 220 IPR011598 GO:0046983(InterPro)
Cre08g0028 240 Pfam Helix-loop-helix DNA-binding domain 176 221 IPR011598 GO:0046983(InterPro)
Cre08g0028 240 MobiDBLite consensus disorder prediction 116 141 - -
Cre08g0028 240 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 47 233 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cre08g0028 240 MobiDBLite consensus disorder prediction 1 17 - -
Cre08g0028 240 MobiDBLite consensus disorder prediction 57 76 - -
Cre08g0028 240 SMART finulus 176 226 IPR011598 GO:0046983(InterPro)
Cre08g0028 240 MobiDBLite consensus disorder prediction 1 25 - -
Cre08g0028 240 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 173 237 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g0028 Cre-Chr8:723099 Cre10g1846 Cre-Chr10:33040593 3.40E-28 dispersed
Cre08g0028 Cre-Chr8:723099 Cre07g2015 Cre-Chr7:35710948 4.60E-25 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54118 PF00010 HLH 2.90E-10 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0028 - - - 0.0