Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0044 ATGAAGGACCCGTTGGAGAGAACCAAAGTAGTGATTAGGCACTTGCCCCCCTCTCTTCCTCACTCAGATCTCTTCCACCATATTCATGATCGATTCGCTGGTCGCTTCAATTGGTCTTACTATCGTCCCGGAAAGACCAGTCAGAAGGACCAGAGATACGCTCGAGCCTACATAGACTTTACCAAACCTGAAGATGTTTTTGAGTTTGCGGAGTTCTTTGATGGCCATGTTTTCGTTAATGAGAAGGGTGCTCAGTATAAGGCTGTAGTTGAATATGCACCTTCTCAACGTGTTCCCAGATCATCTACCAAAAAGGATGGCCGTGAGGGGACAATATACAAAGATCCAGATTATTTGGAGTTTCTCAAACTTATTGCAAAGCCTGCTGAGCATCTTCCAAGTGCTGAAATACAGTTGGAAAGGAAAGAAGCAGAGCAATCTGGTGCTGCAAAAGAAACTCCAATTGTTACCCCTCTCATGGAGTTTGTTCGCCAGAAACGAGCAGTTGAAAGCGGAACACAGGGATCTTCAGTACCTCGGAAGGTCAAAAGAGGTGGGGCAGCATCCTCTAGAAAGCCTGAGTCGAATTCCATGAAGCGAGGGATGGAGAAGAAGAAGTATATTTTAAAGGACAGTGTGAAGAACACAAACCGCAGAGACAAGTCAAATTTCATTTTGGTCCCCAGGCGAGAGGATCAGTCAGCTACTTCAAGTGGGATTGGAGTTTCGGATGTTGGTACAGCTGACTTTGGAAAGAAAAAAATTCTGCTTCTCAAGGGGAAAGAGCGAGATATATCTCATGTTTCTGATGGCATGTTACAGTTGCAGAGTGCTACATCTTCTGGGAATTCTCCTGCAAGTGCATCAAAACATAATCAGAGGCGTGAGGCTGGTGGAAGCATGATCAGAAGCATCCTTTTAAATAATGAAGCACGCCATGGGCAGAGTTCATCAGTGGCTCAGTCTCATCAAAAAATTCAGATCCTGAACTCAGACAATGGGAAGCGACCACCTCGTCCCATTAATGCTCGATCTGGGTCCAATGATATGTCCAGTAATGAACCAAATCCATCTGGTTCAGAAGGGGATGGAAAAAGGGCTCCAGACAGTAAGTTTAGTAAAAAGGAACTTCATGGCCTGGGTAGTGTTAGTGAGAAGCAAGAAAAACGAATAAGAAACAAAGATAGACCTGATCGTGGGGTCTGGGCACCACGCAGTCGTTCAGATGCATCAGTCTCACAACTTGAGGAATCCTCTGTTTCACAATCTAGTCATTTGCTTTCTGACTCGGTTGAAGCATACCGTGGGGAAATGAAAGAAGATATTCATGGAAGCAGGGCTGGGGATGTTACAACAACAATGAGTGGGCGTAACAGTTCAGTGGAGAATGGTTCTGTAAGGCATGCTGGACGTCGCGGGGCTGGCCATGTTATGAAGGATGATGGGTCTTTGAACCCAAATGAAGGGAAGCCATCCAAAAGAGGTGTTGCTGGTGGTCACGAGGTTCGTTTATGCATCCAAACTAAAACAAGTATGGGTTCAGAAGTCATCTTCAGGTTCTTAGCATATTTAAATCATATAATGGCATCCAGACAGGACTATGGTTCCTCAAACTTCCAGGGGAATTATCTCCATTCTGAGGACTTAATGCACATCCTCAGAAGGCATCATGTAAAATGGAGATATGCCCTGGAAGCAGTTGGTAACAGTAATAGGTTTCGTGAACTGGATTGCAAGATTTGCAATTGTTTCGTCGTATACAGGTGGTTACAAAACACAAGGTTCTCTGGTTGA 1794 44.76 MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTKPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPRKVKRGGAASSRKPESNSMKRGMEKKKYILKDSVKNTNRRDKSNFILVPRREDQSATSSGIGVSDVGTADFGKKKILLLKGKERDISHVSDGMLQLQSATSSGNSPASASKHNQRREAGGSMIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPINARSGSNDMSSNEPNPSGSEGDGKRAPDSKFSKKELHGLGSVSEKQEKRIRNKDRPDRGVWAPRSRSDASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRAGDVTTTMSGRNSSVENGSVRHAGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEVRLCIQTKTSMGSEVIFRFLAYLNHIMASRQDYGSSNFQGNYLHSEDLMHILRRHHVKWRYALEAVGNSNRFRELDCKICNCFVVYRWLQNTRFSG 597
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1132646 1139230 - CrPI670011_08g000440.1 Cre08g0044 504962

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0044 597 PANTHER UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN 1 468 IPR039722 GO:0000184(InterPro)|GO:0000184(PANTHER)|GO:0003729(PANTHER)|GO:0005730(PANTHER)|GO:0005737(PANTHER)|GO:0045727(PANTHER)
Cre08g0044 597 SUPERFAMILY RNA-binding domain, RBD 8 97 IPR035979 GO:0003676(InterPro)
Cre08g0044 597 MobiDBLite consensus disorder prediction 407 427 - -
Cre08g0044 597 Pfam Smg-4/UPF3 family 6 168 IPR005120 -
Cre08g0044 597 MobiDBLite consensus disorder prediction 312 331 - -
Cre08g0044 597 MobiDBLite consensus disorder prediction 312 427 - -
Cre08g0044 597 MobiDBLite consensus disorder prediction 440 496 - -
Cre08g0044 597 MobiDBLite consensus disorder prediction 448 465 - -
Cre08g0044 597 MobiDBLite consensus disorder prediction 275 297 - -
Cre08g0044 597 MobiDBLite consensus disorder prediction 364 403 - -
Cre08g0044 597 Gene3D - 2 97 IPR012677 -
Cre08g0044 597 CDD RRM_like_Smg4_UPF3 9 94 - -
Cre08g0044 597 MobiDBLite consensus disorder prediction 344 359 - -
Cre08g0044 597 MobiDBLite consensus disorder prediction 168 202 - -
Cre08g0044 597 MobiDBLite consensus disorder prediction 275 294 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0044 K14328 - - csv:101208317 920.998
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1466 . . . . . . . . . . . . . . . . . . . . . . . . Cla08g00041 Cam08g0040 Cec08g0212 Cco08g0093 Clacu08g0056 Cmu08g0054 Cre08g0044 . . . . . . . . . . . . . . . . Sed10g2126 . . . . . . . . Bhi06g00236 Tan10g2035 Cmetu09g1975 . . . . . . . . . . . Lsi08g00031 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003365 1 4 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 4 1 49