Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0046 ATGGGGAGAGGAAAGATTGAAATAAAGAGAATAGAAAACACAACAAATCGACAAGTGACATTCTGCAAGAGAAGAAATGGACTTTTGAAGAAAGCTTATGAACTCTCTGTTCTTTGTGATGCTGAAGTTGCCCTCATTGTCTTCTCCAGCCGTGGCCGTCTCTATGAATACTCCAATAACAGCATCAAAACTACTATTGAGAGGTACAAGAAGGCTTGTTCTGATAGCTCAGCTACCAGCTCTGTCACTGAACTAAATACTCAATATTATCAGCAAGAATCGGCTAAGCTGCGTCAACAAATACAAATGCTTCAGAATTCCAACAGGCACTTGATGGGGGACTCCTTGAGTGCTCTTACAGTCAAAGAACTAAAGCAGCTTGAAAATAGGCTTGAAAGGGGCATCACTAGAATCAGATCAAAGAAGCATGAAATGTTGCTAGCAGAAATTGAGTATCTTCAAAAAAGGGAGATTGAGCTGGAGAATGAAAATGTGTGTATTAGAACCAAGATAGCTGAAGTTGAGAGGCTCCAACAAGCAAACATGGTATCTGGACAAGAACTGAATGCAATTCAGGCATTGGCTTCTCGCAATTTCTTCTCTCCTAATATGATGGAAGGTGGAGCTGTTACTTACTCTCATCAAGACAAGAAGATGCTTCATCTTGGGTGA 672 40.62 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNSIKTTIERYKKACSDSSATSSVTELNTQYYQQESAKLRQQIQMLQNSNRHLMGDSLSALTVKELKQLENRLERGITRIRSKKHEMLLAEIEYLQKREIELENENVCIRTKIAEVERLQQANMVSGQELNAIQALASRNFFSPNMMEGGAVTYSHQDKKMLHLG 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1162935 1171206 - CrPI670011_08g000460.1 Cre08g0046 504964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0046 223 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cre08g0046 223 FunFam agamous-like MADS-box protein AGL11 13 96 - -
Cre08g0046 223 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre08g0046 223 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre08g0046 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre08g0046 223 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre08g0046 223 Coils Coil 124 163 - -
Cre08g0046 223 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre08g0046 223 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre08g0046 223 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre08g0046 223 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre08g0046 223 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cre08g0046 223 Pfam K-box region 86 171 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cre08g0046 223 Gene3D - 14 77 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre08g0046 223 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 186 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2141 Cre-Chr2:34994301 Cre08g0046 Cre-Chr8:1162935 1.00E-66 dispersed
Cre03g0993 Cre-Chr3:8745829 Cre08g0046 Cre-Chr8:1162935 5.10E-72 dispersed
Cre04g2020 Cre-Chr4:37497982 Cre08g0046 Cre-Chr8:1162935 1.70E-71 dispersed
Cre07g1309 Cre-Chr7:27468952 Cre08g0046 Cre-Chr8:1162935 5.10E-11 dispersed
Cre08g0046 Cre-Chr8:1162935 Cre09g2199 Cre-Chr9:41090544 3.30E-38 dispersed
Cre08g0046 Cre-Chr8:1162935 Cre08g0053 Cre-Chr8:1257843 4.20E-25 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54120 PF01486 K-box 8.60E-27 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0046 K09264 - csv:101208072 415.616