Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0053 ATGTATTGGCCAATGGACGCCATAGTCAGACCTCGATATATTGGGGTTGGATATAGGGGTAGAGACCTTGGCTCACAAGAAGTGGACTGTTGCAGGAGAGGATTGATCTACCTCGACCTCAACCTTCGAGGCCATAGTGGGTCAAGCGACCTGAAGCTAGTTCAAACTAGTGGAAGGTTGTGTGCTGGGGTTTGGAAAGGTTTGTTAATTATGGCTCGTGGGAAGGTTCAAATGAAGAGGATTGAGAATCCAGTGCATAGACAAGTTACTTTCTGTAAGCGTCGAGCTGGTCTCCTTAAGAAGGCTAAGGAGCTCTCTGTCCTTTGCGATGCTCAAATTGGAGTTTTCATTTTCTCTGCTCATGGAAAGCTCTATGAACTTGCCACTAAAGGAACCATGCAAGGGCTTATTGAAAGGTACATGAAACACACCAATGGGAATCAGCCACCAGACCCACCTATTGATCACCAAACTCTGGAAGTAAAGGATGAGGTCATCAGGCTGAAGCAAGAAATTGAAGTTCTAAAGGGTCTCAGGAATGCTTTGGGAGGAGGAGGAGGAAGGGAAGGAATAATGACATTGGATGAACTTGATATGTTTGAGAAACAACTTGAGATTTGGATTTGTCAAGTGCGTACTACAAAGATGAAGTTCATGTGTGAAGAGATTGAAGCACTGAGGAACCAGGAATTGATACTGAAAGCTGCCAACAAGTATCTTCATGATAAGATGGATGAAAACATTAGCAACACAACTAACATTGAACCTGTGAATATTACTAACTGTCAATATCCACTAACTATACAGGATGAGTTATTTCAGCTTTGCACTTAA 834 42.81 MYWPMDAIVRPRYIGVGYRGRDLGSQEVDCCRRGLIYLDLNLRGHSGSSDLKLVQTSGRLCAGVWKGLLIMARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAQIGVFIFSAHGKLYELATKGTMQGLIERYMKHTNGNQPPDPPIDHQTLEVKDEVIRLKQEIEVLKGLRNALGGGGGREGIMTLDELDMFEKQLEIWICQVRTTKMKFMCEEIEALRNQELILKAANKYLHDKMDENISNTTNIEPVNITNCQYPLTIQDELFQLCT 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1257843 1264339 - CrPI670011_08g000530.1 Cre08g0053 504971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0053 277 PANTHER SERUM RESPONSE FACTOR HOMOLOG 71 250 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cre08g0053 277 Gene3D - 85 148 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre08g0053 277 Pfam K-box region 158 244 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cre08g0053 277 CDD MADS_MEF2_like 72 146 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cre08g0053 277 ProSiteProfiles K-box domain profile. 158 250 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cre08g0053 277 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 80 126 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre08g0053 277 ProSiteProfiles MADS-box domain profile. 71 131 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre08g0053 277 SUPERFAMILY SRF-like 71 146 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre08g0053 277 PRINTS MADS domain signature 73 93 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre08g0053 277 PRINTS MADS domain signature 108 129 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre08g0053 277 PRINTS MADS domain signature 93 108 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre08g0053 277 SMART madsneu2 71 130 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g0053 Cre-Chr8:1257843 Cre08g0990 Cre-Chr8:23015602 6.40E-31 dispersed
Cre08g0046 Cre-Chr8:1162935 Cre08g0053 Cre-Chr8:1257843 4.20E-25 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54121 PF01486 K-box 7.60E-16 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0053 - - - 0.0