Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre08g0053 | ATGTATTGGCCAATGGACGCCATAGTCAGACCTCGATATATTGGGGTTGGATATAGGGGTAGAGACCTTGGCTCACAAGAAGTGGACTGTTGCAGGAGAGGATTGATCTACCTCGACCTCAACCTTCGAGGCCATAGTGGGTCAAGCGACCTGAAGCTAGTTCAAACTAGTGGAAGGTTGTGTGCTGGGGTTTGGAAAGGTTTGTTAATTATGGCTCGTGGGAAGGTTCAAATGAAGAGGATTGAGAATCCAGTGCATAGACAAGTTACTTTCTGTAAGCGTCGAGCTGGTCTCCTTAAGAAGGCTAAGGAGCTCTCTGTCCTTTGCGATGCTCAAATTGGAGTTTTCATTTTCTCTGCTCATGGAAAGCTCTATGAACTTGCCACTAAAGGAACCATGCAAGGGCTTATTGAAAGGTACATGAAACACACCAATGGGAATCAGCCACCAGACCCACCTATTGATCACCAAACTCTGGAAGTAAAGGATGAGGTCATCAGGCTGAAGCAAGAAATTGAAGTTCTAAAGGGTCTCAGGAATGCTTTGGGAGGAGGAGGAGGAAGGGAAGGAATAATGACATTGGATGAACTTGATATGTTTGAGAAACAACTTGAGATTTGGATTTGTCAAGTGCGTACTACAAAGATGAAGTTCATGTGTGAAGAGATTGAAGCACTGAGGAACCAGGAATTGATACTGAAAGCTGCCAACAAGTATCTTCATGATAAGATGGATGAAAACATTAGCAACACAACTAACATTGAACCTGTGAATATTACTAACTGTCAATATCCACTAACTATACAGGATGAGTTATTTCAGCTTTGCACTTAA | 834 | 42.81 | MYWPMDAIVRPRYIGVGYRGRDLGSQEVDCCRRGLIYLDLNLRGHSGSSDLKLVQTSGRLCAGVWKGLLIMARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAQIGVFIFSAHGKLYELATKGTMQGLIERYMKHTNGNQPPDPPIDHQTLEVKDEVIRLKQEIEVLKGLRNALGGGGGREGIMTLDELDMFEKQLEIWICQVRTTKMKFMCEEIEALRNQELILKAANKYLHDKMDENISNTTNIEPVNITNCQYPLTIQDELFQLCT | 277 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 1257843 | 1264339 | - | CrPI670011_08g000530.1 | Cre08g0053 | 504971 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre08g0053 | 277 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 71 | 250 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Cre08g0053 | 277 | Gene3D | - | 85 | 148 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cre08g0053 | 277 | Pfam | K-box region | 158 | 244 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cre08g0053 | 277 | CDD | MADS_MEF2_like | 72 | 146 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Cre08g0053 | 277 | ProSiteProfiles | K-box domain profile. | 158 | 250 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cre08g0053 | 277 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 80 | 126 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cre08g0053 | 277 | ProSiteProfiles | MADS-box domain profile. | 71 | 131 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cre08g0053 | 277 | SUPERFAMILY | SRF-like | 71 | 146 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cre08g0053 | 277 | PRINTS | MADS domain signature | 73 | 93 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cre08g0053 | 277 | PRINTS | MADS domain signature | 108 | 129 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cre08g0053 | 277 | PRINTS | MADS domain signature | 93 | 108 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cre08g0053 | 277 | SMART | madsneu2 | 71 | 130 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre08g0053 | Cre-Chr8:1257843 | Cre08g0990 | Cre-Chr8:23015602 | 6.40E-31 | dispersed | |
Cre08g0046 | Cre-Chr8:1162935 | Cre08g0053 | Cre-Chr8:1257843 | 4.20E-25 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54121 | PF01486 | K-box | 7.60E-16 | No_clan | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre08g0053 | - | - | - | 0.0 |