Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0070 ATGGGCTGCATGTGCTCAAGAGATTCCTCAGAACCAGAGGATAGCGATCACAAAGAGTCTGAAAAAGATTTGAACAAATCTTCAGTCCAGTTGGTTGCCCCTTCTCCCTCAAAAAGAGAGGATATGCTGTTAGAGATTCAGTTGTCAAGGCAGGCATCTAAACCAAATGGGGGTTCTGTTCATAAAGCAAAGGCCAATGGAGGTTCTGTCCATCGAGCAAAGGAGGATGATGAATCTGAGAATAAATCCATAAAGGCTGCAAAACCAAATAATGATAATGCTTCAGGAGGTGGAAAGCAGCCTGAGATTTTTCGGTTAGCTAGCTTGTCTAAAGGGGCTGAAGCTGAACTTGTCATGGCTGGATGGCCTTCATGGTTAGCTTCCGTTGCTGGAGAAGCCATCAAAGGGTGGGTGCCTCGCCGGGCTGACTCCTTTGAAAAGTTAGACAAAATTGGACAGGGAACTTACAGCAGTGTATATAAAGCCCGTGACCTTGAAACTGGTAAAATTGTGGCATTGAAAAAAGTAAGATTTGTAAATATGGATCCCGAAAGTGTCCGTTTTATGGCTAGGGAAATCTATATTTTGCGCAAACTTGATCATCCAAATGTTATGAAGCTTGAGGGTCTAGTCACTTCCAGAATGTCGGGCAGCTTGTACCTTGTTTTTGAGTACATGGAGCATGACCTTGCTGGCCTTGCAGCAGCTCCTGGACGTAAGTTTACGGAGGCTCAGATTAAATGTTATGTGCAACAATTGCTGCATGGACTTGAGCACTGTCATAGTCGGGGAATTCTGCACCGGGATATCAAAGGTTCAAATCTTCTTGTTGACAATAATGGTGGGCTTAAGATTGGAGACTTTGGTCTTGCTACCTTTTTTCAGCCTGATCAAAAGCAGCCATTGACAAGCCGGGTTGTGACGTTGTGGTACAGGGCACCTGAGCTTTTGCTTGGTGCTACCCAATATGGACCTGCCATAGATCTCTGGAGCTGTGGCTGTATCATTGCTGAGCTATTTGCTGGAAAACCTATTATGCCAGGAAGAACAGAGGTGGAACAAATGCACAAAATTTTTAAGCTCTGTGGTTCACCATCTGAGGAGTTCTGGCAGAGAACAAAGTTGCCACATGCAACCAGCTTCAAACCTCAACACCGTTATAAAAGCTGCCTTTCTGAGACATTTAAAAGTTTCCCTTCTTCAGCTCTGGCTCTTGTTAATAAGCTACTTGCTATTGAACCAGAGCACAGAGGATCAGCTACTTTAGCCCTCAGGAGTGAGTTTTTCAGAACAGAACCTCTCCCTTGTGACCCGTCAAGCTTACCAAAATATCCGCCGAGCAAAGAATTCGATGCCAAGCTGCGGAATGAAGAAGAAAAAAAGAAAAAGGCGGAAGCTGTGAAGGGACGCCATCCTGAATCGGTAAGAAGGGGCTCAAGAGACACCAAAGCAGTTCCTACTCCCGAATTCAATACTCAAGGAGATATTACTATGAAGGCACACCCAATCTCGAAAAAAATGAGTGTGAAATACAACCCTCAAGAAGACAGTGAGCCTCCAAGAGTTGCGCAAAATCGGTACAACCACTCAACTTCTATGGTGCACCCAAGCATTGTAGGTTTATGGGGTAAGCCTACCGAAGCCTCGAGAAATTGTGCAGAGTCAAAGACAAAGAAATCTCAGATGCATCAGTCAGTGGGAGATTTATCAACCTCTTCTCTGAAGAAGGAAGACTCGGTGTCTACTAAAGATTGTGGAATGGGTTATGTTCAAAAGAAGAACAGAATACACTACTCAGGACCATTGGTGCCTACAGGGGGAACCATTGAAGACATGCTGAAGGAGCACGAGAGACAAATCCAGCAGGCTTTTCGAAAGGCACGACTCGACAAAGCGAAGACAAACAAGAGTTATGGTGATCAGGTAGAAGATGGTTCTGCTGCTCTCAAACTGAATGCTGCAACTGTCTGCAAAGAACCATAA 1983 44.78 MGCMCSRDSSEPEDSDHKESEKDLNKSSVQLVAPSPSKREDMLLEIQLSRQASKPNGGSVHKAKANGGSVHRAKEDDESENKSIKAAKPNNDNASGGGKQPEIFRLASLSKGAEAELVMAGWPSWLASVAGEAIKGWVPRRADSFEKLDKIGQGTYSSVYKARDLETGKIVALKKVRFVNMDPESVRFMAREIYILRKLDHPNVMKLEGLVTSRMSGSLYLVFEYMEHDLAGLAAAPGRKFTEAQIKCYVQQLLHGLEHCHSRGILHRDIKGSNLLVDNNGGLKIGDFGLATFFQPDQKQPLTSRVVTLWYRAPELLLGATQYGPAIDLWSCGCIIAELFAGKPIMPGRTEVEQMHKIFKLCGSPSEEFWQRTKLPHATSFKPQHRYKSCLSETFKSFPSSALALVNKLLAIEPEHRGSATLALRSEFFRTEPLPCDPSSLPKYPPSKEFDAKLRNEEEKKKKAEAVKGRHPESVRRGSRDTKAVPTPEFNTQGDITMKAHPISKKMSVKYNPQEDSEPPRVAQNRYNHSTSMVHPSIVGLWGKPTEASRNCAESKTKKSQMHQSVGDLSTSSLKKEDSVSTKDCGMGYVQKKNRIHYSGPLVPTGGTIEDMLKEHERQIQQAFRKARLDKAKTNKSYGDQVEDGSAALKLNAATVCKEP 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1516257 1520525 - CrPI670011_08g000700.1 Cre08g0070 504988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0070 660 ProSitePatterns Protein kinases ATP-binding region signature. 151 174 IPR017441 GO:0005524(InterPro)
Cre08g0070 660 ProSitePatterns Serine/Threonine protein kinases active-site signature. 265 277 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre08g0070 660 FunFam probable serine/threonine-protein kinase At1g54610 228 469 - -
Cre08g0070 660 Pfam Protein kinase domain 145 429 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre08g0070 660 Coils Coil 447 467 - -
Cre08g0070 660 MobiDBLite consensus disorder prediction 1 99 - -
Cre08g0070 660 MobiDBLite consensus disorder prediction 553 581 - -
Cre08g0070 660 PANTHER CELL DIVISION PROTEIN KINASE 144 429 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Cre08g0070 660 SMART serkin_6 145 429 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre08g0070 660 MobiDBLite consensus disorder prediction 9 25 - -
Cre08g0070 660 Gene3D Phosphorylase Kinase; domain 1 132 227 - -
Cre08g0070 660 MobiDBLite consensus disorder prediction 68 85 - -
Cre08g0070 660 FunFam probable serine/threonine-protein kinase At1g54610 132 227 - -
Cre08g0070 660 SUPERFAMILY Protein kinase-like (PK-like) 138 437 IPR011009 -
Cre08g0070 660 MobiDBLite consensus disorder prediction 458 483 - -
Cre08g0070 660 Coils Coil 613 633 - -
Cre08g0070 660 ProSiteProfiles Protein kinase domain profile. 145 429 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre08g0070 660 MobiDBLite consensus disorder prediction 558 576 - -
Cre08g0070 660 CDD STKc_CDK9_like 145 429 - -
Cre08g0070 660 MobiDBLite consensus disorder prediction 458 494 - -
Cre08g0070 660 Gene3D Transferase(Phosphotransferase) domain 1 228 469 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g0070 Cre-Chr8:1516257 Cre11g0557 Cre-Chr11:2596343 1.70E-194 dispersed
Cre08g0070 Cre-Chr8:1516257 Cre05g0708 Cre-Chr5:6258340 5.40E-161 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64306 PF00069 Pkinase 3.20E-70 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0070 K08819 - csv:101208709 1197.19