Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0095 ATGGGAGAGCCTAGCTCAATGGGGAGCCACGGCGCTGCGACGTCGAGCTATCGCGGTGTTCGGAAGAGGAAATGGGGGAAATGGGTGTCGGAGATTCGAGAGCCGGGAAAGAAGACGAGAATTTGGTTGGGGAGCTTCGAGACCCCGGAGATGGCAGCAGCGGCCTATGACGTCGCTGCCTACCACTTCCGTGGTCGGGATGCTCGTCTCAACTTCCCGCATCTTGTCAACTCTCTTCCCTTCCCTCTTAGCTCTACTCCTGACGACATCCGTGTTGCCGCCCACGAGGCGGCGTTGCGGTTACGAACAACACCCGCGGTTGTGTCGGAGGGTGAGGAATCTTCAGCCTCGGGTCTTGCTCCAATCACTGTCCGACTGTCGCCGAGCCAAATTCAGGCGATTAATGAGTCAACGTTGGACTCGCCGAAGATGTGGATGCAAATGTCGTCGGAGAGTTTGCTTATGGAGGAGTTCTCAAATGGTACTGTGTTTATTGATGACATGGACGATGAGATGTGGGAGAATATGCATAATGATTCGTTGTGGGATCCTTAG 555 54.77 MGEPSSMGSHGAATSSYRGVRKRKWGKWVSEIREPGKKTRIWLGSFETPEMAAAAYDVAAYHFRGRDARLNFPHLVNSLPFPLSSTPDDIRVAAHEAALRLRTTPAVVSEGEESSASGLAPITVRLSPSQIQAINESTLDSPKMWMQMSSESLLMEEFSNGTVFIDDMDDEMWENMHNDSLWDP 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1990090 1990644 + CrPI670011_08g000950.1 Cre08g0095 505013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0095 184 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g0095 184 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g0095 184 Pfam AP2 domain 16 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g0095 184 Gene3D AP2/ERF domain 16 75 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g0095 184 CDD AP2 15 75 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g0095 184 SMART rav1_2 16 79 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g0095 184 FunFam Ethylene-responsive transcription factor 2 15 74 - -
Cre08g0095 184 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 146 IPR051032 -
Cre08g0095 184 SUPERFAMILY DNA-binding domain 15 74 IPR016177 GO:0003677(InterPro)
Cre08g0095 184 ProSiteProfiles AP2/ERF domain profile. 16 73 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g1559 Cre-Chr7:31000069 Cre08g0095 Cre-Chr8:1990090 2.40E-23 dispersed
Cre08g0095 Cre-Chr8:1990090 Cre10g0498 Cre-Chr10:4143869 6.40E-27 dispersed
Cre11g2185 Cre-Chr11:33557710 Cre08g0095 Cre-Chr8:1990090 3.30E-16 dispersed
Cre08g0095 Cre-Chr8:1990090 Cre08g0097 Cre-Chr8:2118342 1.30E-48 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54122 PF00847 AP2 3.60E-13 CL0081 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0095 - - - 0.0