Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0097 ATGGAACCCAATTATAGAGGCGTTCGTAAGCGTAAATGGGGAAAATGGGTCTCCGAAATCCGTGAACCGGGCAAAAAAACCCGAATCTGGCTCGGAAGTTACCATCTCCCGGAAATGGCCGCCGCTGCCTACGACGTCGCTGCCCTCCACCTCCGCGGCCCCGACGCCCGCCTCAACTTCCCCGAGCTGGCCGACTCCTTCCCTCGCCCTGCCAGCTCCTCCCCTGACCACATTCAAGCCGCCGCCCACATGGCTGCATTGCGGCTCGCCAATACCAAGCCGCCGGACCCTCCGGCGCCGGTTCGAGTGGGGCTGTCCCCTAGCCAGATTCAAGCCATTAATGAGTCGCCGTTGGATTCTCCCACCATGTGGATGCAGATGGCGGCGGAGGCGCTTTCTTTACAGCCTCATGACTGGGACGAAGAATATAACATGCACAATCATCATTCCATTTGGGATTATTCTTCAATTTAA 474 57.59 MEPNYRGVRKRKWGKWVSEIREPGKKTRIWLGSYHLPEMAAAAYDVAALHLRGPDARLNFPELADSFPRPASSSPDHIQAAAHMAALRLANTKPPDPPAPVRVGLSPSQIQAINESPLDSPTMWMQMAAEALSLQPHDWDEEYNMHNHHSIWDYSSI 157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2118342 2118815 + CrPI670011_08g000970.1 Cre08g0097 505015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0097 157 Pfam AP2 domain 3 53 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g0097 157 Gene3D AP2/ERF domain 4 62 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g0097 157 PRINTS Ethylene responsive element binding protein signature 5 16 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g0097 157 PRINTS Ethylene responsive element binding protein signature 43 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g0097 157 SMART rav1_2 4 67 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g0097 157 SUPERFAMILY DNA-binding domain 4 62 IPR016177 GO:0003677(InterPro)
Cre08g0097 157 CDD AP2 3 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g0097 157 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 2 108 IPR051032 -
Cre08g0097 157 FunFam Ethylene-responsive transcription factor 2 4 62 - -
Cre08g0097 157 ProSiteProfiles AP2/ERF domain profile. 4 61 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1321 Cre-Chr4:32028340 Cre08g0097 Cre-Chr8:2118342 3.20E-20 dispersed
Cre05g2198 Cre-Chr5:33703466 Cre08g0097 Cre-Chr8:2118342 1.20E-20 dispersed
Cre08g0097 Cre-Chr8:2118342 Cre11g0713 Cre-Chr11:4246311 9.30E-27 dispersed
Cre08g0095 Cre-Chr8:1990090 Cre08g0097 Cre-Chr8:2118342 1.30E-48 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54123 PF00847 AP2 3.20E-13 CL0081 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0097 - - - 0.0