Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0113 ATGTTCGTGGGGTTTGCCGCATCGACGGGGATCAAAACAAGCTCTCATTACATTTTGGGATGGAGCTTTGCAGTGAATGCACCAGCGCGACAACTGTGGTACTCTCACCTTCCCGACGGACCAAAAGAGCAAAATCTTTCTTCTTCATCCAATAATCCCCAGTTGAAGGTTGTTCTAGCCGTTTCAACTATTGTGGCCATTTTGGGAATTGTTTTCTTAACCTTCTTGTTTATAAGAATGAAGAAGACAGAGAACTTGGAGGACTGGGAAAGAGATTGCGCTCACAGATTCAACTACAAGGATCTTTACACAGCAACAAATGGATTTAATGACAGTGAGCAAATTGGAATTGGGGGATTTGGGTCAGTATATAAAGGCAAGTTACGTTCAACTGGAGCTGAGATTGCTGTGAAGAGAGTGAAACGAAACTCAAGCCAAGGAATGAAGGAATTCGCTGCGGAAATCGAAAGCTTGGGACGATTAAGACACAAGAACTTGGTTAATCTTCAAGGATGGTGCAAGAAAAAGAACGATCTTCTCATAGTTTATGATTATATTCCAAATGGGAGTCTTCATTCTCTTCTCTATACTCCAAAACAGAGCTTGATATTGAAATGGGAGCAAAGATTCAACATCCTTAAAGGCATTGCTGCAGGATTACTATATCTTCATGAAGATTGGGAGCAAGTAGTGATCCACCGAGACGTAAAGCCAAGCAATGTTCTGATTGACGCCGACATGAATGCCCGGTTGAGCGATTTCGGATTATCCAGGCAATACGACCACGACGAAATATCACACACGACTCGAGTCGTCGGCACAATAGGCTACATACCGCCAGAGTTGTTTTGCACGGGGAAGGCGTCGTAG 870 43.56 MFVGFAASTGIKTSSHYILGWSFAVNAPARQLWYSHLPDGPKEQNLSSSSNNPQLKVVLAVSTIVAILGIVFLTFLFIRMKKTENLEDWERDCAHRFNYKDLYTATNGFNDSEQIGIGGFGSVYKGKLRSTGAEIAVKRVKRNSSQGMKEFAAEIESLGRLRHKNLVNLQGWCKKKNDLLIVYDYIPNGSLHSLLYTPKQSLILKWEQRFNILKGIAAGLLYLHEDWEQVVIHRDVKPSNVLIDADMNARLSDFGLSRQYDHDEISHTTRVVGTIGYIPPELFCTGKAS 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2410279 2411148 + CrPI670011_08g001130.1 Cre08g0113 505031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0113 289 SUPERFAMILY Concanavalin A-like lectins/glucanases 1 131 IPR013320 -
Cre08g0113 289 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre08g0113 289 SUPERFAMILY Protein kinase-like (PK-like) 94 286 IPR011009 -
Cre08g0113 289 FunFam - 186 280 - -
Cre08g0113 289 SMART serkin_6 109 289 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre08g0113 289 FunFam serine/threonine-protein kinase PBS1-like 78 185 - -
Cre08g0113 289 Gene3D - 1 59 - -
Cre08g0113 289 Gene3D Phosphorylase Kinase; domain 1 94 185 - -
Cre08g0113 289 Pfam Protein kinase domain 110 283 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre08g0113 289 Gene3D Transferase(Phosphotransferase) domain 1 186 289 - -
Cre08g0113 289 ProSiteProfiles Protein kinase domain profile. 109 289 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre08g0113 289 ProSitePatterns Protein kinases ATP-binding region signature. 115 138 IPR017441 GO:0005524(InterPro)
Cre08g0113 289 PANTHER - 2 289 IPR050528 GO:0002229(PANTHER)|GO:0004675(PANTHER)|GO:0005886(PANTHER)|GO:0042742(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g0113 Cre-Chr8:2410279 Cre10g2340 Cre-Chr10:37577691 1.20E-128 dispersed
Cre08g0113 Cre-Chr8:2410279 Cre08g0119 Cre-Chr8:2503605 9.90E-75 proximal
Cre08g0113 Cre-Chr8:2410279 Cre08g0120 Cre-Chr8:2504328 1.20E-41 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64308 PF00069 Pkinase 3.80E-42 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0113 - - - 0.0