Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0157 ATGGCTTATGACCATTTGGATCCATCTAAAAGCTATTCAGTTGCTTCAGGACCAGGTCCAATCTCAAGGCCTGCACCAGAACTGAAGCTCTATCAGTTTTTTGTTTTCTGTATTCCAATTCTTTTCACTTTCATTCTTCTATTCCTTTTCTACCTCCTTTATCTTCGTCGACGAAGGGCTGATTGGACTTCCATTCGAATGCGAACATCTGCTGCAGCCAATAACAATAACATCTCTACATCTGAGGTTGGGTTGAAGAAGGAATTCAGGGAGATGCTTCCTATTATTGTATACAATGAGACATTCTTTGTCACTGATACACTTTGTTCGGTTTGTTTAGGAGAATACAAAACAGAAGATAAACTTCAGAAGATACCATCATGTGGGCATGTATTTCACCTTGACTGCATTGATCATTGGCTATCCAACCACAACACTTGTCCACTCTGCCGTCTCTCCGTCCTCTCACCGTCGTCTCAACCACCACATATTCAGATCGACATGGGACTCGAATCGTCGAACGAACCACAATGCGAAGAAGCACCTCCTCTACTCAGTACTCAAGCTTGTCAACATACAACACCTCCAGTGTAA 594 42.59 MAYDHLDPSKSYSVASGPGPISRPAPELKLYQFFVFCIPILFTFILLFLFYLLYLRRRRADWTSIRMRTSAAANNNNISTSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTEDKLQKIPSCGHVFHLDCIDHWLSNHNTCPLCRLSVLSPSSQPPHIQIDMGLESSNEPQCEEAPPLLSTQACQHTTPPV 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3446545 3448057 + CrPI670011_08g001570.1 Cre08g0157 505075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0157 197 SMART ring_2 109 150 IPR001841 -
Cre08g0157 197 CDD RING-H2_EL5-like 109 151 - -
Cre08g0157 197 Pfam Ring finger domain 108 151 IPR001841 -
Cre08g0157 197 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Cre08g0157 197 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 156 IPR013083 -
Cre08g0157 197 PANTHER RING-H2 FINGER PROTEIN ATL16 21 173 IPR044600 GO:0016567(InterPro)|GO:0016740(InterPro)
Cre08g0157 197 SUPERFAMILY RING/U-box 93 162 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g0157 Cre-Chr8:3446545 Cre09g2332 Cre-Chr9:42602877 6.60E-22 dispersed
Cre08g0157 Cre-Chr8:3446545 Cre09g0350 Cre-Chr9:3401002 2.90E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0157 K19039 - csv:101219324 347.436