Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0158 ATGCTACCTAGCCACATATTTTGGACCTATTTTCCTTTTATAGGTGCTGAGCTTAAGATTCAACTGATAAATCACATAATACTCCATGAAAGCAGGAGTCAGCTATTTGAACAAATTGTGTGTAAGAAAGTTGGTCATGTTGGACATCCTTTGGGGTCGCATCCTTTCTCATCTCGAGTTGGCTTTCCAGATTCGAGACAAAATTTTACTCATACAGTCACAAAGAATGCAAGTGATCGAGTTTATGCTGCTTATAATGTATATAAGGGAAAAGCTGGACTCTCTATGAAGCCTTGCTTGCCAACTTTCACTAAATTAGAGTCTGGGAGTCTTGTAATTGATCGACGTGGCTCAGTAATGCTGTCATTCTTTCCTGCCATAGGCGAGCGCAAGTATGACTGGACAAAGAAACAGTTGTTTGCATTGTCTCCAACAGAAGTTGGTACTTTAATCAGTTTGGGTCCCAGAGATTCATGCGAATTCTTCCATGACCCTGGAATGCTTTCCAGTACTGCTGGTCAAGTAAGGAAGAGCTTAACAATTAAGGCCCATGCAGATGGCAATGGCTATTTCATCTCTTTGAATGTTGTTAATAACTCACAAAACACCAAAGATTTCTTGAGTGTTCCCTTCACAGCAGGCGAATTTTCTGTGATGAAGACGGCTTGCAGTTTTGCTCTGCCTCACATTCTTGGTTGGGACCGGCTGACCCAGCCTAATCCTGGCATGGGGTTATTGACGGAGGTAAGGGATTCCTCACGGGGGGATGACTTGTTCACACCTGGATGTGAAGGAGTCGCCCCCATTGGAGACGAAAATATGAAGAGTCGTCCATGGACGTCTCAGGTGTTTTTACAAGAGTTGGTGGGCTCTCCAGCTCCGAACTTGACAACCACCGCGGAGCTGATGGACAAAGACAGTTTTCTGGCTGCTCCGTATACATCTGCTTTGGGTCCAATGAGCATTCTAAAGAAATTCCAGAGGAAGATGCAGGGACAACTAACTGATTGTTGTTCTTCGCAAAGGATACATCGTTTCACTCAACCCTACGCAGTTACCATTAGTGTCATCGTTGATGATAATGGTAACTCAAACAATAAGCACATACGTGTGATTGTCCATATGCTGACACGTAATGTAGTAGTTACACGTTGA 1155 43.64 MLPSHIFWTYFPFIGAELKIQLINHIILHESRSQLFEQIVCKKVGHVGHPLGSHPFSSRVGFPDSRQNFTHTVTKNASDRVYAAYNVYKGKAGLSMKPCLPTFTKLESGSLVIDRRGSVMLSFFPAIGERKYDWTKKQLFALSPTEVGTLISLGPRDSCEFFHDPGMLSSTAGQVRKSLTIKAHADGNGYFISLNVVNNSQNTKDFLSVPFTAGEFSVMKTACSFALPHILGWDRLTQPNPGMGLLTEVRDSSRGDDLFTPGCEGVAPIGDENMKSRPWTSQVFLQELVGSPAPNLTTTAELMDKDSFLAAPYTSALGPMSILKKFQRKMQGQLTDCCSSQRIHRFTQPYAVTISVIVDDNGNSNNKHIRVIVHMLTRNVVVTR 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3467282 3480161 - CrPI670011_08g001580.1 Cre08g0158 505076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0158 384 Gene3D Transcriptional Coactivator Pc4; Chain A 73 241 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
Cre08g0158 384 Pfam Whirly transcription factor 87 221 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Cre08g0158 384 SUPERFAMILY ssDNA-binding transcriptional regulator domain 78 237 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
Cre08g0158 384 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 58 239 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g0158 Cre-Chr8:3467282 Cre08g0830 Cre-Chr8:21393341 9.50E-41 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54126 PF08536 Whirly 1.00E-53 CL0609 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0158 K26561 - csv:101219085 360.918