Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0160 ATGACTCCATCTAACTTGGCAAGTCAGTTTGGGGATACCACTTACACAAAAGTTTTTGTGGGTGGTTTGGCTTGGGAGACCCACAAAGATACTATGAAGAAATACTTTGAACAATTTGGCGATATCTTGGAGGCTGTTGTTATTACCGACAAAGCCACTGGACGATCCAAAGGCTATGGATTTGTCACGTTCCGAGAACCCGACGCTGCCATGAGAGCTTGCGTTGATGCTGCTCCGGTCATCGACGGCCGAAGAGCCAATTGCAATCTTGCTTCTCTTGGTGTTCAAAGATCCAAACCCTCCACGCCTAAGCACGAAAAAAAGAAATGGGAATTGACAGGAGGAGGAGGAGGAGGTGGTGGAAGAAACTTTAGGGTATTGAGCTCTTTCCAGACTGGATTTGGAGGGAATGTTGGATCAGCTTTTCATTCACCAACAACTTTCCCTCATTATGCCATCCAGCAAGGGATCCCCTACAATGTCTATGGGTACTCTTCCTATTCGCCCGACTACACTTACCCTACGAGCTATTACAATGTTTACGGCGGGGCAACTGCACAGTACCCCATGTACGGTACGGGTCCCGGCGGAATATTGAGCGGAGCGGCAGCGGCGGCAGCAGCATTCTACCCATATTTCCAATTCGGGGAAGGCAGCGGTGGCGGCGGTTCGGGGCAGCAAGGGTATGGGGTTCAGTACCCTCACCATCTGTTTCAGTACTCAGCGGCCATTAATTCAACTGCTGCAACGACCTTCCCTCAGCACTATGCTGCTCCTCCTATGTCTCTGCCTCCCACGCCCCCCACCTTGCCATCAGGCGTAACCATGGCTCTTCCTGCACCAATCCCACATCGTTAG 858 51.17 MTPSNLASQFGDTTYTKVFVGGLAWETHKDTMKKYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHEKKKWELTGGGGGGGGRNFRVLSSFQTGFGGNVGSAFHSPTTFPHYAIQQGIPYNVYGYSSYSPDYTYPTSYYNVYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGGSGQQGYGVQYPHHLFQYSAAINSTAATTFPQHYAAPPMSLPPTPPTLPSGVTMALPAPIPHR 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3651406 3654426 + CrPI670011_08g001600.1 Cre08g0160 505078

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0160 285 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 100 IPR000504 GO:0003723(InterPro)
Cre08g0160 285 SMART rrm1_1 17 89 IPR000504 GO:0003723(InterPro)
Cre08g0160 285 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 10 97 - -
Cre08g0160 285 CDD RRM_RBM24_RBM38_like 16 91 - -
Cre08g0160 285 Gene3D - 6 139 IPR012677 -
Cre08g0160 285 MobiDBLite consensus disorder prediction 95 118 - -
Cre08g0160 285 SUPERFAMILY RNA-binding domain, RBD 7 122 IPR035979 GO:0003676(InterPro)
Cre08g0160 285 Pfam RNA recognition motif 18 73 IPR000504 GO:0003723(InterPro)
Cre08g0160 285 PANTHER BOULE-RELATED 2 263 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0160 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g0888 Cre-Chr6:2213187 Cre08g0160 Cre-Chr8:3651406 2.10E-48 dispersed
Cre08g0160 Cre-Chr8:3651406 Cre08g0861 Cre-Chr8:21759592 3.10E-44 dispersed
Cre08g0160 Cre-Chr8:3651406 Cre11g1840 Cre-Chr11:30061267 1.20E-37 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1758 Blo01g01688 Blo12g00810 . . Bpe02g00254 Bpe04g00327 . Bma01g02455 . . . . . . . Cpe06g00946 . . . . . . . . Cla08g00181 . Cec08g0069 Cco08g0251 . Cmu08g0171 Cre08g0160 . . . . . . . . . . Bda11g00916 . . . . . Sed08g1872 . Cmo09g01205 . . . Car09g01075 . Cpe02g00981 Bhi06g00110 Tan10g1835 Cmetu11g0599 . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005770 1 3 1 1 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 39