Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0169 ATGTCCACATCCACCAGAACCAACCATATAGCTTCTACATTCTCCACATCTAATCTTCACCATTTGCACAATTTCTATTCTTTCCTTCATCATTCATTCCCTCCGGCCATGGCTTCTTTGGCAGCCTCCACCGCCGCCGCCTCCCTTGGCGTCTCCGAAATGCTGAGAAATCCTCTCAGCTTCTCCGGTGCCTCCGCTAGGTCAGCTCCCTCTGCTTCTAGCCCAGCCACCTTCAAAACCGTTGCGCTTTTCGGGAAGAAGCCTGCAGCACCATCCAAGCCAAAGCCCTCTGCCGTCTCCCCAGTCAACGACGAGCTCGCCAAGTGGTATGGTCCGGACAGAAGGATTTTCTTGCCGGAAGGGCTGTTGGACCGATCGGAGATCCCTGAGTATTTGAACGGAGAAGTCCCCGGCGACTATGGTTACGATCCCTTTGGACTCAGCAAGAAGCCAGAGGACTTCAGCAAATACCAAGCGTTTGAGTTGATTCATGCAAGATGGGCCATGCTTGGAGCTGCTGGTTTCATCATCCCTGAGGCCTTCAACAAATTCGGAGCCAACTGCGGCCCCGAGGCTGTCTGGTTCAAGACTGGAGCTCTGCTTCTTGATGGAAATACATTGAATTACTTTGGAAACAACATTCCCATCAACCTCATCGTCGCGGTCATTGCTGAGGTTGTTCTTGTTGGTGGCGCTGAATATTACAGAATCATCAATGGCTTGAACTTTGAGGACAAGCTTCACCCGGGAGGGCCGTTCGACCCATTGGGGTTAGCAGACGACCCGGACCAAGCAGCGATTTTGAAGGTGAAGGAGATCAAGAATGGGAGATTGGCAATGTTTGCAATGCTAGGGTTTTACTTCCAAGCATATGTGACAGGAGAAGGGCCAGTGGAGAACTTGGCAAAGCATTTGAGTGATCCTTTTGGAAACAACTTGCTCACAGTCATTTCTGGGAATGCTGAAAGAGTTCCAACTCTTTAA 984 50.61 MSTSTRTNHIASTFSTSNLHHLHNFYSFLHHSFPPAMASLAASTAAASLGVSEMLRNPLSFSGASARSAPSASSPATFKTVALFGKKPAAPSKPKPSAVSPVNDELAKWYGPDRRIFLPEGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPINLIVAVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3848296 3850830 - CrPI670011_08g001690.1 Cre08g0169 505087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0169 327 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 55 322 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Cre08g0169 327 Gene3D Chlorophyll a/b binding protein domain 116 327 - -
Cre08g0169 327 FunFam Chlorophyll a-b binding protein, chloroplastic 116 327 - -
Cre08g0169 327 SUPERFAMILY Chlorophyll a-b binding protein 108 317 - -
Cre08g0169 327 Pfam Chlorophyll A-B binding protein 129 290 IPR022796 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g2048 Cre-Chr4:37721756 Cre08g0169 Cre-Chr8:3848296 4.70E-55 dispersed
Cre08g0169 Cre-Chr8:3848296 Cre10g1333 Cre-Chr10:26855449 8.90E-56 dispersed
Cre08g0169 Cre-Chr8:3848296 Cre02g2152 Cre-Chr2:35092041 6.80E-56 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0169 K08916 - csv:101218137 528.094