Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0235 ATGGCCGCCCTTCACCAAACCGCCGCCTCTCTCCAGGCCAAGCTCCTTCCAACCGTCCGATTCTCCCGAACCACTCCCGTAAACCTCTCCTTCTCCGCCACTTTTCCTTCCCGCGGACTCCGCCTCAGCCACCACCGCTCTCACGGCGGCGCTAAAATGTCCGCCACAGCCGCTGGAAGCTACGCCGCAGCGCTGGCCGAAGTCGCTTCCTCGAATAACACGCTGGAAGCCACAAGCGGCGACGTGGAGAAGATTGAGAGCTTGTTCGCGGATCCGCAGGTGCTCAATTTCTTCGCGAACCCAACGATTAGCATCGAGAAGAAACTGGCAGTGGTGGATGAAATCGCTTCGTCCTCATCTCTACAGCCGCATTCAGCGAATTTCTTGAAGATCCTGGTGGACGCGAAGAGGATCGACATCCTGAAGGAGATCGTGACGGAGTTTGAATTGGTGTACAACAAGATTACGAACACGGAGCTTGCGGTGGTGAGTTCGGTTGTGCAGTTGGAGCAGCAGCATTTGGCGCAGATCGCGAAGCAGGTGCAGAAATTGAGCGGAGCGAAGAATGTGAGGATAAAGACGCAGATCGATCCGAGTCTGGTGGCTGGATTCACAGTCAGGTTTGGGAATTCTGGATCGAAACTTATTGATTTGAGCGTCAAGAAACAGCTTGAGGAAATTGCTGCTCAGCTTGATCTTGGCAATATTCAACTGGCTGTATGA 723 54.08 MAALHQTAASLQAKLLPTVRFSRTTPVNLSFSATFPSRGLRLSHHRSHGGAKMSATAAGSYAAALAEVASSNNTLEATSGDVEKIESLFADPQVLNFFANPTISIEKKLAVVDEIASSSSLQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6062838 6063560 + CrPI670011_08g002350.1 Cre08g0235 505153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0235 240 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 190 209 IPR020781 GO:0015986(InterPro)|GO:0016020(InterPro)|GO:0046933(InterPro)
Cre08g0235 240 Pfam ATP synthase delta (OSCP) subunit 58 231 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cre08g0235 240 Hamap ATP synthase subunit delta [atpD]. 53 233 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cre08g0235 240 NCBIfam ATP synthase F1 subunit delta 58 231 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cre08g0235 240 PANTHER ATP SYNTHASE DELTA CHAIN 30 231 IPR000711 GO:0009535(PANTHER)|GO:0009772(PANTHER)|GO:0009773(PANTHER)|GO:0015986(InterPro)|GO:0015986(PANTHER)|GO:0045261(PANTHER)|GO:0046933(PANTHER)|GO:0046933(InterPro)
Cre08g0235 240 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 54 157 IPR026015 -
Cre08g0235 240 Gene3D - 57 149 IPR026015 -
Cre08g0235 240 PRINTS ATP synthase delta subunit signature 206 224 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cre08g0235 240 PRINTS ATP synthase delta subunit signature 188 203 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cre08g0235 240 PRINTS ATP synthase delta subunit signature 137 151 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cre08g0235 240 PRINTS ATP synthase delta subunit signature 57 76 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cre08g0235 240 PRINTS ATP synthase delta subunit signature 126 137 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g0235 Cre-Chr8:6062838 Cre09g0397 Cre-Chr9:3905772 1.50E-07 dispersed
Cre08g0235 Cre-Chr8:6062838 Cre10g1390 Cre-Chr10:27606565 6.00E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0235 K02113 - csv:101211740 398.282