Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0236 ATGACGACGCTCTCTGTGACATCTGATGTATGTGACGACGGTGCAGCTGATATCAACGGCGGCTTAAGCCTTGTTCTTCGGGCAACCGTAGCAGCAATATGCGCGAGGCAGTCGGTCTATGTCTTTGCCTCCGAGTCTTTGATTCCCTTCTCCTCCATTTTGGCCTCTCTCTCTCTTCTATCTCTCTCTCAGTTATTGTACCCCGAGAGACCTATGAACATGCTAGGTTCACATGAGGAGGAAGATGATCATGGTGAGGTCTTCCTTGATGAAGCTGACATAATCAATGAAATTCCAGTTGATGAGGAAGATCTTCCTGATGCTGTTGATGAAGAGGGCTCCGATGATGAATATTTTGATGAGGCTGATGATTCCGTTCATACTTTTACTGGCCATACTGGTGAGGTTTACACAGTGGTCTGTAGTCCGATAGATGCCACATTAGTTGCGACAGGGGGTGGAGATGACAAAGGATTTATGTGGAAGATTGGCCGAGGAGATTTTGCACAGGAGCTTAGTGGTCACAAGGATTCCGTATCTAGCTTAGCATTTAGTGCAGATGGACAACTACTTGCATCAGGGAGTTTTGATGGGCTTATCCAAATTTGGGATACTTCATCTGGGAAACTTAAATGCGCACTTGAAGGCCCTGGAGGGGGAATTGAGTGGGTAAGGTGGCATCCAAGAGGACATCTGGTTTTGGCTGGTTCTGAAGATTCCACCGCTTGGATGTGGAATGCTGATAGAGGTGTCTATCTTAATATATTTTCTGGTCACGGTGCTAGTGTTACATGCGGTGACTTTACTCCGGATGGTAAAATGATATGCACGGGTTCTGATGATGCAACGATGAGGATATGGAATCCAAGAAGTGGAGAAAATATTCATGTCGTGAGAGGTCATCCCTATCATACCGAAGGATTGACTTCTATAGCACTCACTTCTGATTCAACCCTTGCTCTTACTGGTTCAAAAGATGGTTCTGTTCATATTGTGAATATAGCAACTGGAAAGGTAGTGAATTCTCTGGTTTCCCATTCAGATTCAATTGAATGCATCGGTCTAGCACCAAGCTCCCCTTGGGCTGCAACTGGAGGCATGGATCAGAAGCTCATCATTTGGGATCTTCGACAATCAACACCACGCAGTACATGCGAGCACGAGGATGGAGTAACATGTCTTACTTGGATTGGCACATCGAGATACCTTGCAACTGGATGTGTCGATGGTCGAGTACGAATGTGGGATAGCCTCTCTGGAGAATGTGTTAGAACCTTCACCGGCCACTCCGATGCCATCCAATCTCTCGCGGTGTCTGCCAACAATGAGTACCTTGTTTCTGTTGCTCTTGATAATACAGCTCGGATTTTTGAGATTGCAGAGTATCATTGA 1392 45.98 MTTLSVTSDVCDDGAADINGGLSLVLRATVAAICARQSVYVFASESLIPFSSILASLSLLSLSQLLYPERPMNMLGSHEEEDDHGEVFLDEADIINEIPVDEEDLPDAVDEEGSDDEYFDEADDSVHTFTGHTGEVYTVVCSPIDATLVATGGGDDKGFMWKIGRGDFAQELSGHKDSVSSLAFSADGQLLASGSFDGLIQIWDTSSGKLKCALEGPGGGIEWVRWHPRGHLVLAGSEDSTAWMWNADRGVYLNIFSGHGASVTCGDFTPDGKMICTGSDDATMRIWNPRSGENIHVVRGHPYHTEGLTSIALTSDSTLALTGSKDGSVHIVNIATGKVVNSLVSHSDSIECIGLAPSSPWAATGGMDQKLIIWDLRQSTPRSTCEHEDGVTCLTWIGTSRYLATGCVDGRVRMWDSLSGECVRTFTGHSDAIQSLAVSANNEYLVSVALDNTARIFEIAEYH 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6074609 6099286 + CrPI670011_08g002360.1 Cre08g0236 505154

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0236 463 PRINTS G protein beta WD-40 repeat signature 403 417 IPR020472 -
Cre08g0236 463 PRINTS G protein beta WD-40 repeat signature 191 205 IPR020472 -
Cre08g0236 463 PRINTS G protein beta WD-40 repeat signature 275 289 IPR020472 -
Cre08g0236 463 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 384 416 - -
Cre08g0236 463 ProSiteProfiles Trp-Asp (WD) repeats profile. 426 463 IPR001680 GO:0005515(InterPro)
Cre08g0236 463 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 343 377 - -
Cre08g0236 463 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 256 293 - -
Cre08g0236 463 ProSiteProfiles Trp-Asp (WD) repeats profile. 343 384 IPR001680 GO:0005515(InterPro)
Cre08g0236 463 ProSitePatterns Trp-Asp (WD) repeats signature. 191 205 IPR019775 -
Cre08g0236 463 SMART WD40_4 419 458 IPR001680 GO:0005515(InterPro)
Cre08g0236 463 SMART WD40_4 249 288 IPR001680 GO:0005515(InterPro)
Cre08g0236 463 SMART WD40_4 165 204 IPR001680 GO:0005515(InterPro)
Cre08g0236 463 SMART WD40_4 122 162 IPR001680 GO:0005515(InterPro)
Cre08g0236 463 SMART WD40_4 336 375 IPR001680 GO:0005515(InterPro)
Cre08g0236 463 SMART WD40_4 378 416 IPR001680 GO:0005515(InterPro)
Cre08g0236 463 SMART WD40_4 291 333 IPR001680 GO:0005515(InterPro)
Cre08g0236 463 SMART WD40_4 207 246 IPR001680 GO:0005515(InterPro)
Cre08g0236 463 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 426 463 - -
Cre08g0236 463 ProSiteProfiles Trp-Asp (WD) repeats profile. 301 342 IPR001680 GO:0005515(InterPro)
Cre08g0236 463 ProSitePatterns Trp-Asp (WD) repeats signature. 362 376 IPR019775 -
Cre08g0236 463 ProSiteProfiles Trp-Asp (WD) repeats profile. 214 255 IPR001680 GO:0005515(InterPro)
Cre08g0236 463 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 123 450 IPR011047 -
Cre08g0236 463 CDD WD40 170 458 - -
Cre08g0236 463 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 172 209 - -
Cre08g0236 463 ProSiteProfiles Trp-Asp (WD) repeats profile. 172 213 IPR001680 GO:0005515(InterPro)
Cre08g0236 463 ProSiteProfiles Trp-Asp (WD) repeats profile. 129 171 IPR001680 GO:0005515(InterPro)
Cre08g0236 463 ProSiteProfiles Trp-Asp (WD) repeats profile. 256 297 IPR001680 GO:0005515(InterPro)
Cre08g0236 463 Gene3D - 122 461 IPR015943 GO:0005515(InterPro)
Cre08g0236 463 Pfam WD domain, G-beta repeat 383 416 IPR001680 GO:0005515(InterPro)
Cre08g0236 463 Pfam WD domain, G-beta repeat 252 288 IPR001680 GO:0005515(InterPro)
Cre08g0236 463 Pfam WD domain, G-beta repeat 125 161 IPR001680 GO:0005515(InterPro)
Cre08g0236 463 Pfam WD domain, G-beta repeat 293 331 IPR001680 GO:0005515(InterPro)
Cre08g0236 463 Pfam WD domain, G-beta repeat 337 375 IPR001680 GO:0005515(InterPro)
Cre08g0236 463 Pfam WD domain, G-beta repeat 169 204 IPR001680 GO:0005515(InterPro)
Cre08g0236 463 Pfam WD domain, G-beta repeat 209 246 IPR001680 GO:0005515(InterPro)
Cre08g0236 463 Pfam WD domain, G-beta repeat 420 457 IPR001680 GO:0005515(InterPro)
Cre08g0236 463 ProSiteProfiles Trp-Asp (WD) repeats profile. 384 425 IPR001680 GO:0005515(InterPro)
Cre08g0236 463 FunFam Angio-associated migratory cell protein-like protein 122 461 - -
Cre08g0236 463 PANTHER MITOCHONDRIAL DIVISION PROTEIN 1-RELATED 77 461 IPR051179 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0236 K24725 - - csv:101211245 786.949
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g0236 Cre-Chr8:6074609 Cre08g0239 Cre-Chr8:6141436 2.60E-08 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1306 . . . . . . . . . . . Cma09g01283 . . . . . . . . . . . . Cla08g00264 Cam08g0704 . Cco08g0349 Clacu08g0411 . Cre08g0236 . . . . . . . . . . . Bda13g01432 . . . . . . Cmo09g01240 . . . Car09g01096 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004733 3 1 1 2 1 1 2 2 0 1 1 1 2 1 1 3 1 1 2 1 1 2 1 1 1 1 1 3 1 2 42