Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0278 ATGGAGATGGAGCAGTTCAAGGTTTTGGCTCTGGGTTTCGTCTCTTTGATCTTGCTGGTTCCTCCACTATGGCTCGTTTCTGCTAACATGGAAGGTGATGCTTTGCATAGCCTAAGAACCAGCTTGCAGGATCCTAACAATGTCTTGCAGAGTTGGGATCCCACTCTCGTCAATCCCTGTACATGGTTTCATGTTACATGCAATAATGATAATAGTGTCATAAGAGTTGATCTCGGAAATGCAGCTTTATCAGGCACACTTGTTCCACAGCTTGGCTTGCTAAAAAATTTGCAGTATCTAGAGCTCTACAGTAATAACATAAGTGGAGTAATTCCGAATGATCTGGGGAATCTGACTAGTTTGGTGAGCTTAGATCTTTATTTGAACAGATTTTCGGGTCCGATTCCAGACACATTGGGCAAGCTGTCAAAACTACGATTTCTCCGACTGAACAACAACAGCTTATCAGGCCCCATTCCTATGTCATTGACTAATATTTCATCCCTTCAAGTGTTGGATCTATCAAATAACCATCTCTCAGGCCCGGTTCCAGATAACGGTTCCTTCTCCTTATTCACCCCGATCAGTTTTGCCAACAACTTGGATCTTTGTGGCCCTGTTACTGGCCGTCCTTGCCCGGGATCTCCTCCATTTTCTCCTCCTCCACCATTTGTTCCACCGCCACCTATATCTTCACCAGGAGGGAATAGTGCTACTGGAGCTATTGCTGGTGGAGTTGCTGCAGGTGCTGCTTTACTTTTTGCAGCTCCAGCAATTGCATTTGCATGGTGGCGTCGTAGGAAACCCCAAGAAGTTTTCTTTGATGTTCCTGCCGAAGAGGATCCTGAAGTGCATCTGGGACAGCTTAAAAGATTTTCACTAAGAGAACTACAAGTGGCAACTGATAGTTTTAGTAACAAGAACATACTTGGTAGGGGTGGATTTGGCAAAGTCTATAAAGGTCGATTGGCAGACGGTTCTTTAGTAGCTGTAAAAAGACTTAAGGAAGAACGTACACCAGGTGGAGAGCTGCAGTTTCAAACAGAAGTAGAGATGATCAGCATGGCTGTGCATCGGAACCTGCTACGGCTACGTGGGTTTTGCATGACGCCAACTGAACGACTTCTTGTTTACCCCTACATGGCCAATGGAAGTGTTGCATCTTGCTTAAGAGAACGACCACCATCCCAACCACCTCTTGATTGGAGAACGAGAAAGCGAATTGCATTGGGATCTGCGAGAGGGCTGTCTTATTTGCATGATCACTGTGATCCGAAGATTATTCATCGTGATGTAAAAGCTGCAAATATTTTGCTGGATGAGGAGTTTGAAGCTGTTGTAGGGGACTTTGGGTTGGCCAAACTTATGGATTACAAAGATACTCATGTCACCACTGCAGTACGTGGTACGATTGGACATATAGCTCCTGAGTACCTTTCCACTGGGAAATCTTCTGAGAAAACAGATGTTTTCGGGTATGGCATCATGCTTTTAGAGCTTATCACTGGTCAAAGAGCTTTCGATTTGGCTCGACTTGCCAATGATGATGATGTCATGCTTCTTGATTGGGTGAAAGGACTCCTGAAAGAGAAGAAGTTAGAAATGCTGGTTGACCCTGATCTTCAGAATAATTATGTAGAATCTGAGGTAGAACAGTTGATTCAAGTTGCCTTACTCTGCACACAAGGCTCCCCGATGGACCGACCGAAGATGTCCGAGGTGGTGAGAATGCTTGAAGGTGATGGATTGGCAGAAAGATGGGATGAGTGGCAAAAGGTGGAGATCCTTCGGCAAGAAATCGATCTATCGCCCCATCCAAATTCCGATTGGATTGTTGATTCAACTGAAAATCTACATGCAGTTGAGCTGTCGGGTCCAAGATGA 1884 44.96 MEMEQFKVLALGFVSLILLVPPLWLVSANMEGDALHSLRTSLQDPNNVLQSWDPTLVNPCTWFHVTCNNDNSVIRVDLGNAALSGTLVPQLGLLKNLQYLELYSNNISGVIPNDLGNLTSLVSLDLYLNRFSGPIPDTLGKLSKLRFLRLNNNSLSGPIPMSLTNISSLQVLDLSNNHLSGPVPDNGSFSLFTPISFANNLDLCGPVTGRPCPGSPPFSPPPPFVPPPPISSPGGNSATGAIAGGVAAGAALLFAAPAIAFAWWRRRKPQEVFFDVPAEEDPEVHLGQLKRFSLRELQVATDSFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPPSQPPLDWRTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQNNYVESEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWDEWQKVEILRQEIDLSPHPNSDWIVDSTENLHAVELSGPR 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7409007 7418437 - CrPI670011_08g002780.1 Cre08g0278 505196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0278 627 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Cre08g0278 627 FunFam Somatic embryogenesis receptor kinase 1 27 214 - -
Cre08g0278 627 SUPERFAMILY Protein kinase-like (PK-like) 283 579 IPR011009 -
Cre08g0278 627 Pfam Leucine Rich Repeat 96 118 IPR001611 GO:0005515(InterPro)
Cre08g0278 627 Pfam Leucine Rich Repeat 120 142 IPR001611 GO:0005515(InterPro)
Cre08g0278 627 Pfam Leucine Rich Repeat 144 165 IPR001611 GO:0005515(InterPro)
Cre08g0278 627 Pfam Leucine Rich Repeat 168 186 IPR001611 GO:0005515(InterPro)
Cre08g0278 627 FunFam Somatic embryogenesis receptor-like kinase 1 381 598 - -
Cre08g0278 627 SUPERFAMILY L domain-like 32 195 - -
Cre08g0278 627 Gene3D Transferase(Phosphotransferase) domain 1 381 598 - -
Cre08g0278 627 Gene3D Phosphorylase Kinase; domain 1 273 380 - -
Cre08g0278 627 SMART serkin_6 304 578 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre08g0278 627 ProSiteProfiles Protein kinase domain profile. 304 591 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre08g0278 627 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 13 627 - -
Cre08g0278 627 CDD STK_BAK1_like 310 581 - -
Cre08g0278 627 ProSitePatterns Protein kinases ATP-binding region signature. 310 332 IPR017441 GO:0005524(InterPro)
Cre08g0278 627 Gene3D Ribonuclease Inhibitor 27 214 IPR032675 -
Cre08g0278 627 Pfam Protein tyrosine and serine/threonine kinase 307 578 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre08g0278 627 FunFam Somatic embryogenesis receptor kinase 1 273 380 - -
Cre08g0278 627 ProSitePatterns Serine/Threonine protein kinases active-site signature. 427 439 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g0949 Cre-Chr6:2926019 Cre08g0278 Cre-Chr8:7409007 2.50E-30 dispersed
Cre07g1298 Cre-Chr7:27273395 Cre08g0278 Cre-Chr8:7409007 4.80E-244 dispersed
Cre07g2069 Cre-Chr7:36257414 Cre08g0278 Cre-Chr8:7409007 2.20E-124 dispersed
Cre08g0278 Cre-Chr8:7409007 Cre10g1082 Cre-Chr10:21439598 2.40E-227 dispersed
Cre08g0278 Cre-Chr8:7409007 Cre07g2068 Cre-Chr7:36241445 1.20E-130 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64312 PF00069 Pkinase 9.60E-45 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0278 K13418 - csv:101208695 1141.72