Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre08g0300 | ATGTCCCGATCGCTGGTGCAGCCGATCGGGCAGAAGAGGCTGACCAACGTTGCGGTGGTTCGTTTGAAGAAACACGGTCTTCGTTTCGAGATTGCCTGTTACAAGAACAAGGTCCTTTCTTGGCGCTCTGGCGTGGAAAAGGATTTGGATGAGGTCTTGCAATCACAAATTGTTTATTCGAATGTTTCGAAAGGAGTTCTTGCAAAAACAAAAGATTTAAAAGCAGCTTTTGGTACAGATGATCAGATGGAAATTTGTTTGAAGATTCTTAAAGAAGGGGAACTTCAAATTGCAGGGAAGGAGAGGGAGGCTCAATTATCTAATCAGTTTCGTGATATCGCAACCATTGTTATGCAGAAGACCTTCAATCCTGAAACTAAACGCCCTTACACCATTAGCATGATTGAGCGACTCCTGCGTGAAATTCATTTTGCTGTTGATCCAAACCACAGCTCAAAGAAACAGGCACTAGAGGTCATTCATGAGCTCCAGAAACAGTTCCCAATTAAACGTTCGCCTATGAGAATACGATATGTTGTACCTGAACAAAACTCCCCATCTCTCCTTGATAAGTTAAATGCTTGGAGTGCTAGTATCATTTCCAATGATCAGTCTGGAAATCAGCAACGAAGCATTATTTGTGAATTGGATCCTAGCTTTTATCGAGACTGTAATCCATTAATGAGTGAACTACAAGGCAGATTTGAAGTTCTCTCTTTTTGTTTGCACGAGGAAGGGGACACCAATGTGGATCAATACGACGATGATTATGAGAATATGGAACTGCCACCAAGGCAAGTAAAGGAACCGGAATCGGCTATTCCCCAGCTAAGTGAAGCTTTACAAAAGCAGACAATCTCTGTCAATGGCGAGAATGGCCCGAAGGAAGGAAAACGCTGCAGCACATGCAACGTAGTTGTGGGGGATGCTACTCAGTTTAGAGAGCATCACAAGAGTGAATGGCATAAGCATAATGTCAAGCGCAAAACCAAGAATCTTCCACCTTTGACTGAAGAAGAGTGCACGTTAGAATTGGCAATGGGCGAGTCGGAGTCCGACCTGAAGGAGTATTCATTTTGA | 1080 | 43.33 | MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFGTDDQMEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLLREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYVVPEQNSPSLLDKLNAWSASIISNDQSGNQQRSIICELDPSFYRDCNPLMSELQGRFEVLSFCLHEEGDTNVDQYDDDYENMELPPRQVKEPESAIPQLSEALQKQTISVNGENGPKEGKRCSTCNVVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECTLELAMGESESDLKEYSF | 359 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 8952362 | 8955473 | - | CrPI670011_08g003000.1 | Cre08g0300 | 505218 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre08g0300 | 359 | Pfam | SBDS protein, C-terminal domain | 174 | 239 | IPR046928 | - | |
Cre08g0300 | 359 | SUPERFAMILY | Hypothetical protein AF0491, middle domain | 98 | 171 | IPR037188 | - | |
Cre08g0300 | 359 | SUPERFAMILY | FYSH domain | 13 | 96 | IPR036786 | - | |
Cre08g0300 | 359 | FunFam | SBDS, ribosome maturation factor | 3 | 96 | - | - | |
Cre08g0300 | 359 | NCBIfam | ribosome assembly factor SBDS | 13 | 231 | IPR002140 | GO:0042256(InterPro) | |
Cre08g0300 | 359 | FunFam | SBDS, ribosome maturation factor | 100 | 172 | - | - | |
Cre08g0300 | 359 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 300 | 322 | IPR013087 | - | |
Cre08g0300 | 359 | ProSitePatterns | Uncharacterized protein family UPF0023 signature. | 46 | 65 | IPR018023 | - | |
Cre08g0300 | 359 | Pfam | Shwachman-Bodian-Diamond syndrome (SBDS) protein | 16 | 102 | IPR019783 | - | |
Cre08g0300 | 359 | SUPERFAMILY | beta-beta-alpha zinc fingers | 289 | 329 | IPR036236 | - | |
Cre08g0300 | 359 | Gene3D | - | 100 | 172 | IPR037188 | - | |
Cre08g0300 | 359 | Pfam | SBDS protein, domain II | 111 | 171 | IPR018978 | GO:0042254(InterPro) | |
Cre08g0300 | 359 | Gene3D | - | 174 | 251 | - | - | |
Cre08g0300 | 359 | Gene3D | - | 1 | 96 | IPR036786 | - | |
Cre08g0300 | 359 | PANTHER | RIBOSOME MATURATION PROTEIN SBDS | 1 | 248 | IPR039100 | - | |
Cre08g0300 | 359 | SMART | ZnF_U1_5 | 295 | 329 | IPR003604 | GO:0003676(InterPro)|GO:0008270(InterPro) |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre08g0300 | K14574 | - | csv:101215380 | 668.307 |