Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre08g0325 | ATGTCGTTTCGTAGTATAGTTCGTGACGTTAGAGAGGGGTTTGGAAGTTTATCCCGACGTAGTTTTGAGGTGAGACTGCCCGGTCACCAGCGGGGTAAATCTCATGGATCAGTCCATGATTTGCACGACCAACCTCTGGTAATTCAGAATAGTCGTTGGGCTAGCCTCCCGCCTGAGCTATTGCGGGATGTAGTCATGAGACTGGAGAAGAGTGAGAGTGTGTGGCCTGCTCGCAAACATGTTGTTGCTTGTGCTGCTGTTTGTAGGTCGTGGAGGGAAATGTGCAAAGAGATAGTAAAAAGTCCCGAGTTCTCTGGAAAAATCACCTTCCCTGTCTCTTTAAAACAGCCAGGGACTCGTGATGGAACCATTCAATGCTTCATTAAGAGGGACAAATCTAATTTGACTTATCACCTTTACCTTTGCCTTAGTCCTGCTTTACTTGTTGATAATGGGAAGTTTCTTCTTTCTGCCAAAAGAACGAGGAGAACGACCTGCACCGAATACGTGATCTCCATGGATGCAGATAATATATCAAGATCGAGCAACACCTACATTGGAAAACTACGGTCAAATTTTCTTGGGACCAAGTTCATTATCTATGATACACAACCTCCATACAACAATGCCCAGATTTCCCCACCGGGCCGTAGCCGTAGATTCTACTCGAAGAAAGTTTCCCCAAAAGTCCCAACTGGTAGCTATGAGATTGCTCAAGTCACTTACGAACTGAACGTTCTTGGTACAAGAGGCCCTCGAAAGATGCACTGCACGATGCACTCTATCCCTGCCTCGTCTCTTGAGGCTGGTGGTACTGTTCCAGGCCAGCCCGAGGTTGTCCCTCGACTCCTTGGGGATTCATTTCGAAGTATATCATTCTCCAAGTCTGTCTTCAATTCTACAGAGTTCAGTAGTTCCCGTTTCTCTGACATTGTTGGTTCTCAAGACGAAGATCAAATGGGGAAGGAGAGACCATTGATTCTTAGGAACAAGCCACCGCGATGGCATGAGCAGTTGCAGTGTTGGTGCCTTAATTTCCGGGGGCGAGTAACCATTGCTTCTGTCAAGAACTTTCAACTGATAGCTGCTACAGAGCCATCTTCTTCCACAGCTACAAACCAATCACAGCCAAACCAACATGCCCAATCTTCCCAATCTGACCATGATAAGATCATTCTTCAATTTGGGAAGGTCGGGAAGGACATGTTTACGATGGATTACCGATATCCATTGTCAGCATTTCAAGCCTTTGCAATCTGTTTGAGTAGCTTTGACACCAAATTGGCTTGTGAATAA | 1296 | 45.91 | MSFRSIVRDVREGFGSLSRRSFEVRLPGHQRGKSHGSVHDLHDQPLVIQNSRWASLPPELLRDVVMRLEKSESVWPARKHVVACAAVCRSWREMCKEIVKSPEFSGKITFPVSLKQPGTRDGTIQCFIKRDKSNLTYHLYLCLSPALLVDNGKFLLSAKRTRRTTCTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPYNNAQISPPGRSRRFYSKKVSPKVPTGSYEIAQVTYELNVLGTRGPRKMHCTMHSIPASSLEAGGTVPGQPEVVPRLLGDSFRSISFSKSVFNSTEFSSSRFSDIVGSQDEDQMGKERPLILRNKPPRWHEQLQCWCLNFRGRVTIASVKNFQLIAATEPSSSTATNQSQPNQHAQSSQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE | 431 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 10012404 | 10015047 | - | CrPI670011_08g003250.1 | Cre08g0325 | 505243 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre08g0325 | 431 | CDD | F-box_AtTLP-like | 53 | 97 | - | - | |
Cre08g0325 | 431 | MobiDBLite | consensus disorder prediction | 367 | 387 | - | - | |
Cre08g0325 | 431 | Gene3D | Tubby Protein; Chain A | 112 | 425 | IPR025659 | - | |
Cre08g0325 | 431 | Gene3D | - | 48 | 101 | - | - | |
Cre08g0325 | 431 | PRINTS | Tubby superfamily signature | 328 | 345 | IPR000007 | - | |
Cre08g0325 | 431 | PRINTS | Tubby superfamily signature | 234 | 261 | IPR000007 | - | |
Cre08g0325 | 431 | PRINTS | Tubby superfamily signature | 409 | 431 | IPR000007 | - | |
Cre08g0325 | 431 | PRINTS | Tubby superfamily signature | 185 | 209 | IPR000007 | - | |
Cre08g0325 | 431 | PRINTS | Tubby superfamily signature | 346 | 362 | IPR000007 | - | |
Cre08g0325 | 431 | PRINTS | Tubby superfamily signature | 169 | 185 | IPR000007 | - | |
Cre08g0325 | 431 | PRINTS | Tubby superfamily signature | 388 | 407 | IPR000007 | - | |
Cre08g0325 | 431 | FunFam | Tubby-like F-box protein | 110 | 431 | - | - | |
Cre08g0325 | 431 | ProSitePatterns | Tub family signature 1. | 346 | 359 | IPR018066 | - | |
Cre08g0325 | 431 | PANTHER | TUBBY-RELATED | 48 | 430 | - | - | |
Cre08g0325 | 431 | FunFam | Tubby-like F-box protein | 48 | 101 | - | - | |
Cre08g0325 | 431 | SUPERFAMILY | F-box domain | 49 | 96 | IPR036047 | GO:0005515(InterPro) | |
Cre08g0325 | 431 | SUPERFAMILY | Tubby C-terminal domain-like | 102 | 431 | IPR025659 | - | |
Cre08g0325 | 431 | Pfam | Tub family | 114 | 426 | IPR000007 | - | |
Cre08g0325 | 431 | ProSitePatterns | Tub family signature 2. | 416 | 431 | IPR018066 | - | |
Cre08g0325 | 431 | Pfam | F-box-like | 53 | 96 | IPR001810 | GO:0005515(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre05g1169 | Cre-Chr5:11269851 | Cre08g0325 | Cre-Chr8:10012404 | 1.10E-191 | dispersed | |
Cre05g2058 | Cre-Chr5:32570904 | Cre08g0325 | Cre-Chr8:10012404 | 1.10E-116 | dispersed | |
Cre06g1299 | Cre-Chr6:6911502 | Cre08g0325 | Cre-Chr8:10012404 | 2.10E-109 | dispersed | |
Cre08g0325 | Cre-Chr8:10012404 | Cre08g0649 | Cre-Chr8:19438036 | 1.20E-201 | dispersed | |
Cre08g0325 | Cre-Chr8:10012404 | Cre05g0707 | Cre-Chr5:6252309 | 3.20E-122 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54133 | PF01167 | Tub | 1.20E-118 | CL0395 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre08g0325 | K19600 | - | csv:101206041 | 848.966 |