Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0325 ATGTCGTTTCGTAGTATAGTTCGTGACGTTAGAGAGGGGTTTGGAAGTTTATCCCGACGTAGTTTTGAGGTGAGACTGCCCGGTCACCAGCGGGGTAAATCTCATGGATCAGTCCATGATTTGCACGACCAACCTCTGGTAATTCAGAATAGTCGTTGGGCTAGCCTCCCGCCTGAGCTATTGCGGGATGTAGTCATGAGACTGGAGAAGAGTGAGAGTGTGTGGCCTGCTCGCAAACATGTTGTTGCTTGTGCTGCTGTTTGTAGGTCGTGGAGGGAAATGTGCAAAGAGATAGTAAAAAGTCCCGAGTTCTCTGGAAAAATCACCTTCCCTGTCTCTTTAAAACAGCCAGGGACTCGTGATGGAACCATTCAATGCTTCATTAAGAGGGACAAATCTAATTTGACTTATCACCTTTACCTTTGCCTTAGTCCTGCTTTACTTGTTGATAATGGGAAGTTTCTTCTTTCTGCCAAAAGAACGAGGAGAACGACCTGCACCGAATACGTGATCTCCATGGATGCAGATAATATATCAAGATCGAGCAACACCTACATTGGAAAACTACGGTCAAATTTTCTTGGGACCAAGTTCATTATCTATGATACACAACCTCCATACAACAATGCCCAGATTTCCCCACCGGGCCGTAGCCGTAGATTCTACTCGAAGAAAGTTTCCCCAAAAGTCCCAACTGGTAGCTATGAGATTGCTCAAGTCACTTACGAACTGAACGTTCTTGGTACAAGAGGCCCTCGAAAGATGCACTGCACGATGCACTCTATCCCTGCCTCGTCTCTTGAGGCTGGTGGTACTGTTCCAGGCCAGCCCGAGGTTGTCCCTCGACTCCTTGGGGATTCATTTCGAAGTATATCATTCTCCAAGTCTGTCTTCAATTCTACAGAGTTCAGTAGTTCCCGTTTCTCTGACATTGTTGGTTCTCAAGACGAAGATCAAATGGGGAAGGAGAGACCATTGATTCTTAGGAACAAGCCACCGCGATGGCATGAGCAGTTGCAGTGTTGGTGCCTTAATTTCCGGGGGCGAGTAACCATTGCTTCTGTCAAGAACTTTCAACTGATAGCTGCTACAGAGCCATCTTCTTCCACAGCTACAAACCAATCACAGCCAAACCAACATGCCCAATCTTCCCAATCTGACCATGATAAGATCATTCTTCAATTTGGGAAGGTCGGGAAGGACATGTTTACGATGGATTACCGATATCCATTGTCAGCATTTCAAGCCTTTGCAATCTGTTTGAGTAGCTTTGACACCAAATTGGCTTGTGAATAA 1296 45.91 MSFRSIVRDVREGFGSLSRRSFEVRLPGHQRGKSHGSVHDLHDQPLVIQNSRWASLPPELLRDVVMRLEKSESVWPARKHVVACAAVCRSWREMCKEIVKSPEFSGKITFPVSLKQPGTRDGTIQCFIKRDKSNLTYHLYLCLSPALLVDNGKFLLSAKRTRRTTCTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPYNNAQISPPGRSRRFYSKKVSPKVPTGSYEIAQVTYELNVLGTRGPRKMHCTMHSIPASSLEAGGTVPGQPEVVPRLLGDSFRSISFSKSVFNSTEFSSSRFSDIVGSQDEDQMGKERPLILRNKPPRWHEQLQCWCLNFRGRVTIASVKNFQLIAATEPSSSTATNQSQPNQHAQSSQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10012404 10015047 - CrPI670011_08g003250.1 Cre08g0325 505243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0325 431 CDD F-box_AtTLP-like 53 97 - -
Cre08g0325 431 MobiDBLite consensus disorder prediction 367 387 - -
Cre08g0325 431 Gene3D Tubby Protein; Chain A 112 425 IPR025659 -
Cre08g0325 431 Gene3D - 48 101 - -
Cre08g0325 431 PRINTS Tubby superfamily signature 328 345 IPR000007 -
Cre08g0325 431 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Cre08g0325 431 PRINTS Tubby superfamily signature 409 431 IPR000007 -
Cre08g0325 431 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Cre08g0325 431 PRINTS Tubby superfamily signature 346 362 IPR000007 -
Cre08g0325 431 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Cre08g0325 431 PRINTS Tubby superfamily signature 388 407 IPR000007 -
Cre08g0325 431 FunFam Tubby-like F-box protein 110 431 - -
Cre08g0325 431 ProSitePatterns Tub family signature 1. 346 359 IPR018066 -
Cre08g0325 431 PANTHER TUBBY-RELATED 48 430 - -
Cre08g0325 431 FunFam Tubby-like F-box protein 48 101 - -
Cre08g0325 431 SUPERFAMILY F-box domain 49 96 IPR036047 GO:0005515(InterPro)
Cre08g0325 431 SUPERFAMILY Tubby C-terminal domain-like 102 431 IPR025659 -
Cre08g0325 431 Pfam Tub family 114 426 IPR000007 -
Cre08g0325 431 ProSitePatterns Tub family signature 2. 416 431 IPR018066 -
Cre08g0325 431 Pfam F-box-like 53 96 IPR001810 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1169 Cre-Chr5:11269851 Cre08g0325 Cre-Chr8:10012404 1.10E-191 dispersed
Cre05g2058 Cre-Chr5:32570904 Cre08g0325 Cre-Chr8:10012404 1.10E-116 dispersed
Cre06g1299 Cre-Chr6:6911502 Cre08g0325 Cre-Chr8:10012404 2.10E-109 dispersed
Cre08g0325 Cre-Chr8:10012404 Cre08g0649 Cre-Chr8:19438036 1.20E-201 dispersed
Cre08g0325 Cre-Chr8:10012404 Cre05g0707 Cre-Chr5:6252309 3.20E-122 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54133 PF01167 Tub 1.20E-118 CL0395 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0325 K19600 - csv:101206041 848.966