Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0330 ATGCTTGGGGACTCCACTACTTCCGTCTTGGGCGGCGGCGCCGGAGGAGGAGAGGCCGCCGTGCCGGAGACGACTCATCATCACGATGGACTGATGGGGGACATGGAGGAGAATAATAACAATTCTGGTGAGGATGAGAGAGGGAGAAGCGGAGGTGGAGGCGGAGACGACGGTGACCGGAGCTTCGGCGGAAACCGGTGGCCGAGACAAGAAACTTTAGCTCTCTTGAAAATACGGTCAGAAATGGACGTGGCTTTTCGAGATGCAAGCGTTAAAGGCCCTTTGTGGGAACAAATTTCCAGGAAATTGGGGGAGCTTGGGTATCATCGAAGTGCAAAAAAATGCAAGGAGAAATTTGAGAATGTTTACAAATATCACAAAAGAACTAAAGAAGTTAGAAGTGGGAAACCAGATAGCAAAACTTATAAGTTCTTTGAACAATTAGAAGCTCTCGAGAATCACCCTCCTCTTAATTTCCACTCCCATTTGTCTAAACCAACTCCTCCGCCGCAGCCGCCACCGCCTACCGCCGTCATTTCCCCCATTCCTTCAAGTACTGTTCCATCCACCACTCTACCTCACTTGATGAACATATCATTCTCTCAACCAAACCCCACAATTCATCTCCCATCTCCTCCGCCCCCTCCTGCTCCGTTGCCATTGAATAACCCTACAAGTTTACCCACCACCGTCCCTCCCTCCATGCCGTTTCAAATCAATGTCTCTTCGGCGGGAGTGGGGTTTCAGAGCATTGAAGCGGATCTCATCTCGAACTCGACGTCTGATGATATCAATTCGTCAACGTCATCAGATGAGGCGTCGAGAAAGAGGAGGAGGAAGAGGAAATGGAAGGACTTTTTTGAGAGATTGATGAAGGAAGTGATTCAAAAGCAAGAGGAAATGCAAAAGAGATTCTTGGAAGCAATTGAGAAGAGGGAGCAAGAGAGAGTTGTGAGAGAAGAAGCTTGGAGGATGCAAGAGATGGCCAAAATCAATAGAGAAAGAGAGATTTTAGCTCAAGAAAGATCAATGGCGGCTGCAAAAGATGCTGCGATTACATCGTTCCTTCAAAAAATAACTGAATCCCAACACAACAATAACAACAACAATGCATCACAACCGTCACCACCGCCCCCGCCACCGCCACCGTCCCAACAACAACAACAACCAATTCCAACGTCAAATCCAACACCAGTCGTGCAACCTTCACCGCGACCGCCACCTCCGGCCGCACCACAAGCTTCCACATTGCAAGTTGTTGTTCCCAATTCCACCCCACAAAAAGTGGGGAACAATAATGAATTGTTGCAAATGGAAATCATGAAAATGGATCATAATGGTGGGGAGAATTATAGCATTAGCCCAGCTTCAAGCTCATCAAGATGGCCAAAAGTGGAAGTTCAAGCACTTATCAAATTGAGAACAAACCTTGAAACCAAATATCAAGAAAATGGGCCAAAAGGGCCTTTATGGGAAGAGATATCATCAGCCATGAAGAAACTTGGGTACAATAGAAATGCAAAGAGGTGCAAAGAGAAGTGGGAAAACATAAACAAATACTTCAAGAAAGTGAAGGAAAGTAGAAAAGCAAGGCCTGAAGATTCCAAGACTTGCCCTTATTTTCACCAGCTTGATGCTTTGTATAGGGAGAAGAGCAACAACACGAACAACATAATCGGATCCGCGACACCAATTATGCAGCATCAACAGCAGCCATTGATGGTTCGTCCCGAGCAACAATGGCCTCCCCAACAAGAGATCACCCGCCCCGACTCAGGAAACGAAGAGATGGAGAGTGAACCAATGGATCGTGATGATAAAGACGACGATGACGAAGATGAAGAGGAAGAGGACGAAGGTGGAGGGAACTATGAGATTGTGGCAAGCAAACCGGCTTCAGTGAGTGCTGCAGAGTGA 1917 47.05 MLGDSTTSVLGGGAGGGEAAVPETTHHHDGLMGDMEENNNNSGEDERGRSGGGGGDDGDRSFGGNRWPRQETLALLKIRSEMDVAFRDASVKGPLWEQISRKLGELGYHRSAKKCKEKFENVYKYHKRTKEVRSGKPDSKTYKFFEQLEALENHPPLNFHSHLSKPTPPPQPPPPTAVISPIPSSTVPSTTLPHLMNISFSQPNPTIHLPSPPPPPAPLPLNNPTSLPTTVPPSMPFQINVSSAGVGFQSIEADLISNSTSDDINSSTSSDEASRKRRRKRKWKDFFERLMKEVIQKQEEMQKRFLEAIEKREQERVVREEAWRMQEMAKINREREILAQERSMAAAKDAAITSFLQKITESQHNNNNNNASQPSPPPPPPPPSQQQQQPIPTSNPTPVVQPSPRPPPPAAPQASTLQVVVPNSTPQKVGNNNELLQMEIMKMDHNGGENYSISPASSSSRWPKVEVQALIKLRTNLETKYQENGPKGPLWEEISSAMKKLGYNRNAKRCKEKWENINKYFKKVKESRKARPEDSKTCPYFHQLDALYREKSNNTNNIIGSATPIMQHQQQPLMVRPEQQWPPQQEITRPDSGNEEMESEPMDRDDKDDDDEDEEEEDEGGGNYEIVASKPASVSAAE 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10442483 10445077 + CrPI670011_08g003300.1 Cre08g0330 505248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0330 638 ProSiteProfiles Myb-like domain profile. 65 123 IPR001005 -
Cre08g0330 638 MobiDBLite consensus disorder prediction 156 234 - -
Cre08g0330 638 MobiDBLite consensus disorder prediction 576 638 - -
Cre08g0330 638 MobiDBLite consensus disorder prediction 206 231 - -
Cre08g0330 638 Coils Coil 284 315 - -
Cre08g0330 638 Gene3D - 67 128 - -
Cre08g0330 638 Gene3D - 462 523 - -
Cre08g0330 638 MobiDBLite consensus disorder prediction 372 413 - -
Cre08g0330 638 ProSiteProfiles Myb-like domain profile. 454 518 IPR001005 -
Cre08g0330 638 FunFam Trihelix transcription factor GT-2 67 128 - -
Cre08g0330 638 FunFam Trihelix transcription factor GT-2 462 523 - -
Cre08g0330 638 MobiDBLite consensus disorder prediction 162 181 - -
Cre08g0330 638 PRINTS Proline rich extensin signature 374 399 - -
Cre08g0330 638 PRINTS Proline rich extensin signature 203 215 - -
Cre08g0330 638 PRINTS Proline rich extensin signature 167 183 - -
Cre08g0330 638 PRINTS Proline rich extensin signature 215 236 - -
Cre08g0330 638 MobiDBLite consensus disorder prediction 576 590 - -
Cre08g0330 638 MobiDBLite consensus disorder prediction 363 416 - -
Cre08g0330 638 MobiDBLite consensus disorder prediction 259 280 - -
Cre08g0330 638 Pfam Myb/SANT-like DNA-binding domain 65 151 IPR044822 -
Cre08g0330 638 Pfam Myb/SANT-like DNA-binding domain 460 547 IPR044822 -
Cre08g0330 638 MobiDBLite consensus disorder prediction 598 622 - -
Cre08g0330 638 MobiDBLite consensus disorder prediction 22 54 - -
Cre08g0330 638 SMART sant 63 125 IPR001005 -
Cre08g0330 638 SMART sant 458 520 IPR001005 -
Cre08g0330 638 CDD GT1 65 130 - -
Cre08g0330 638 PANTHER FI21293P1 38 608 - -
Cre08g0330 638 MobiDBLite consensus disorder prediction 1 67 - -
Cre08g0330 638 CDD GT1 461 525 - -
Cre08g0330 638 MobiDBLite consensus disorder prediction 182 205 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0412 Cre-Chr2:1282423 Cre08g0330 Cre-Chr8:10442483 4.40E-91 dispersed
Cre08g0330 Cre-Chr8:10442483 Cre09g2389 Cre-Chr9:43285516 2.50E-94 dispersed
Cre08g0330 Cre-Chr8:10442483 Cre08g0332 Cre-Chr8:10629697 2.00E-96 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54134 PF13837 Myb_DNA-bind_4 2.90E-21 CL0123 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0330 - - - 0.0