Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0332 ATGGATGTCGACTCCGGCGAGGCAGTGGTGACAGAGGCGGGGGAAGCTCATGAAGTTGGCAACGGCGACAGCCGTGGCGGTGGCGGCGGAAACGGATCGAATTCCGGCGAAGAAGATAAAGGGTCATCTTTGTTGTTGTTTGAAGATGGTGAGAAGAATTTTGGTGGGAACAGGTGGCCAAGACAAGAGACTTTGGCTTTGTTGAAGATAAGATCTGATATGGATGCAATTTTTAGAGATGCAACTCATAAAGCTCCATTGTGGGATGAAGTTTCAAGGAAATTAGGAGAGCTTGGATTCAATCGAACTCCAAAGAAATGCAAGGAGAAATTTGAGAATGTTTATAAGTATCACAAGAGAACCAAAGATGTTCGAAGTGGGAAATCCGATAATAGCAAAAAAGTTTATAGATTTTCAGATGAATTGGAGGCTTTTGATCACCATAATAGCCATCACCAAAATCACATTTTATTCCAATCTCACCACCACCAGCCGCCGCAGCCGCCACCACTGCCGCCAGTTCCTCCTCCGACGACAACAACACCGCCTCCAGTGATGAAAACAGTCAACTCTACTGTTTCATCCACCATGAACACTACAACAAACAACAACTCTTTGCCACCAAAGTCTTCTAATAACCCTCTTTCCAATTTGCCAAACATGGCTGCCAATGTGATGTTTTCGAGCTCCACTTCATCGTCGACGGCGTCGGAGGAAGATCCATTTCGGAGTAGCAGGAGGAGGAGGAAGAAGAGGAAGTGGAGTGATTTCTTCTTGAGATTAACAAAGGAGGTAATAGAGAAGCAAGAAGGGCTTCAATTAAAGTTCCTAGAAGCCTTGGAGAGAATAGAGAATCAAAGGAAATTGAGAGATGAAGCATGGAGAATGAAAGAAATGAAAAGGGTTAATCAAGAACATGAAGTTTTAGTTCAAGAGATGTCCATGGCCGCTGCGAAAGATGCAGCCGTCGTTGCATTTTTGCAAAAGATAGCTCCATCTTCGGCTCCGCCACCGCCACCGCCACCACCACCAATGACAACTCAGTCGCAAAACAACGAGAATAACGGAAAGATGACGTCCGTAATCCCGACGACGACAAATGGAAAGGTGAGCAGCATTGGAGGAAGCCCTTCAAGATGGCCAAAAGGTGAAGTTGAAGCATTGATAAGACTAAGGACAGAAATGGAAATGAAATATCAAGAGAATGGGCCAAAAGGGTTATTATGGGAGGAGATTTCAGCAGCAATGAGAGGGCTTGGATACAATAGAAGCTCAAAGAGATGCAAAGAGAAATGGGAAAACATAAACAAATACTTCAAAAAGGTGAAAGATAGCAACAAGAAGAGAGCAGAAGATTCCAAGACATGTCCTTACTTTCATCAATTAGATGCTCTTTATAGAGAGAAAGAAAAAAATATGAATAATTTTGATATCAATAGCCAAATGGAGCCATTGATGGTTGAACCAGAACAACAATGGCCACCTCCATTTCAAGCCAATAATCAAATCATGGGAAGTTTACAAAGAATAAATGATGAAGGAAATCAAGAAGAAGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGGAGGAAGTAGTAGCACAGATGTGGAAGATTGA 1638 42.61 MDVDSGEAVVTEAGEAHEVGNGDSRGGGGGNGSNSGEEDKGSSLLLFEDGEKNFGGNRWPRQETLALLKIRSDMDAIFRDATHKAPLWDEVSRKLGELGFNRTPKKCKEKFENVYKYHKRTKDVRSGKSDNSKKVYRFSDELEAFDHHNSHHQNHILFQSHHHQPPQPPPLPPVPPPTTTTPPPVMKTVNSTVSSTMNTTTNNNSLPPKSSNNPLSNLPNMAANVMFSSSTSSSTASEEDPFRSSRRRRKKRKWSDFFLRLTKEVIEKQEGLQLKFLEALERIENQRKLRDEAWRMKEMKRVNQEHEVLVQEMSMAAAKDAAVVAFLQKIAPSSAPPPPPPPPPMTTQSQNNENNGKMTSVIPTTTNGKVSSIGGSPSRWPKGEVEALIRLRTEMEMKYQENGPKGLLWEEISAAMRGLGYNRSSKRCKEKWENINKYFKKVKDSNKKRAEDSKTCPYFHQLDALYREKEKNMNNFDINSQMEPLMVEPEQQWPPPFQANNQIMGSLQRINDEGNQEEDEEEEEEEEEEEEEEEDGGSSSTDVED 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10629697 10631920 - CrPI670011_08g003320.1 Cre08g0332 505250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0332 545 Coils Coil 507 536 - -
Cre08g0332 545 MobiDBLite consensus disorder prediction 491 545 - -
Cre08g0332 545 ProSiteProfiles Myb-like domain profile. 51 115 IPR001005 -
Cre08g0332 545 Pfam Myb/SANT-like DNA-binding domain 378 465 IPR044822 -
Cre08g0332 545 Pfam Myb/SANT-like DNA-binding domain 57 137 IPR044822 -
Cre08g0332 545 MobiDBLite consensus disorder prediction 514 545 - -
Cre08g0332 545 SMART sant 55 117 IPR001005 -
Cre08g0332 545 SMART sant 376 438 IPR001005 -
Cre08g0332 545 CDD GT1 378 443 - -
Cre08g0332 545 MobiDBLite consensus disorder prediction 163 183 - -
Cre08g0332 545 FunFam Trihelix transcription factor GT-2 59 120 - -
Cre08g0332 545 MobiDBLite consensus disorder prediction 158 251 - -
Cre08g0332 545 FunFam Trihelix transcription factor GT-2 380 441 - -
Cre08g0332 545 MobiDBLite consensus disorder prediction 348 374 - -
Cre08g0332 545 MobiDBLite consensus disorder prediction 184 239 - -
Cre08g0332 545 ProSiteProfiles Myb-like domain profile. 378 436 IPR001005 -
Cre08g0332 545 PANTHER FI21293P1 30 524 - -
Cre08g0332 545 Gene3D - 59 120 - -
Cre08g0332 545 Gene3D - 380 441 - -
Cre08g0332 545 MobiDBLite consensus disorder prediction 1 45 - -
Cre08g0332 545 MobiDBLite consensus disorder prediction 494 511 - -
Cre08g0332 545 CDD GT1 57 122 - -
Cre08g0332 545 MobiDBLite consensus disorder prediction 332 379 - -
Cre08g0332 545 MobiDBLite consensus disorder prediction 332 347 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g0332 Cre-Chr8:10629697 Cre09g2389 Cre-Chr9:43285516 1.10E-74 dispersed
Cre08g0330 Cre-Chr8:10442483 Cre08g0332 Cre-Chr8:10629697 2.00E-96 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54135 PF13837 Myb_DNA-bind_4 4.10E-22 CL0123 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0332 - - - 0.0