Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre08g0424 | ATGGATTCTGAGGACGATCTTCATTACTCCACCGACGTTGAATCCGTCGACGATGATTGCGACTTCTACAGCGGTGAGATGGACATTGGTATGGGTTATTACAGCGATGACGACGACCCTGATGCTGAGGATTTCGTCGACGATGATACCGATGATTACTTCGAGTCCCGCCGACGCGAGCAAAATTATATGATACTAAATGAATCAGATATAAGACAACGCCAAGAGGACGACATTACAAGAATTTCTTCTGTACTTTCTATATCACGTGTAGCTTCAATTGTCTTGCTCCGCCACTTCAATTGGAGTGTTACTAAAGTCCATGATGAATGGTTTGCTGATGAAGCTCGAGTAAGGAAGCAAGTTGGCTTGTTGGAAGCACCTGTTGTACATGTCCTAAATGCTAGAGAACGAACCTGTGGAATCTGTTTTGAGTCCTATCCAAATAGTAGGATCAAGTCAGCTGCCTGTGGTCATCCTTTCTGTGCTTTCTGCTGGGAAGGCTACATTAGCACATCAATTAATGACGGTCCTGGATGTCTGACTTTGAGATGTCCCGATCCTTCTTGCGGTGCTGTGGTTGATCAAGACATGATTAATTCGTTGGCCTCCAATGAAGACAGGAAGAAATATGCTCGTTACCTTCTTAGGTCTTATGTTGAAGACAACAAAAAGACTAAATGGTGCCCAGCACCTGGTTGTGAGCATGCTGTTCTCTTTGATGCTGGCAATGGAAATTATGATGTTTCTTGCTTCTGCACATATGGCTTTTGCTGGAAATGCACAGAAGAAGCTCACCGTCCTGTAGATTGTGCTACTGTGGAAAAATGGATTTTAAAGAACAGTGCTGAGTCTGAAAATATGAACTGGATATTAGCAAATTCCAAGCCTTGTCCAAAGTGCAAGCGGCCAATCGAGAAAAACCAAGGGTGCATGCACATGACTTGCACACCCCCTTGTAAATTTGAATTTTGCTGGCTATGTCTTGGTGCGTGGTCTGATCATGGTGAAAGAACTGGTGGCTTCTATGCTTGCAACCGATATGAGGTTGCTAAGCAAGATGGTGTGTATGATGAGGCTGAGAAAAGAAGAGAAATGGCGAAGAATTCTTTGGAGAGATACACTCACTATTATGAACGTTGGGCAAGCAATCAAACATCTAGGCAAAAAGCAATGGCAGATTTGCATCAAATGCAGAATGTGCATATTGAGAAGCTCAGTGATATACACTGCACACCTGAGTCTCAGCTAAAGTTCATAACAGAGGCTTGGTTACAGATAATTGAATGTAGACGAGTTTTGAAATGGACTTATGCATATGGTTATTACCTGCCGGAACAGGAGCATGCCAAGAGACAGTTTTTTGAGTATTTGCAAGGTGAGGCTGAGTCTGGATTAGAAAGGCTCCATCAATGCGCCGAAAAGGAATTACTCCAGTTCCTCAATGCAGAAGGTCCATCAAAAGAATTTAACGACTTCCGCACAAAGCTGGCTGGTCTGACCAGTGTTACTCGAAATTACTTTGAGAACCTGGTTAGAGCATTAGAGAATGGGCTCTCAGATGTGAACTCTCATGGAGCAAGCAGCGGCACAACGAGCTCAAAAAGCACAGCAGGAAGTAGTAAAGGAGGGAGAAGTGGACGTGGTAAGGGAGTCAGTCGAACTGCTGGTTCGACCACCAGAAGTGGTGACAGCGCAACTCATTGGTCATGTGAGCACTGTACCTTTGTGAACATTAGATCTGCTACTACGTGCGAGATGTGCCATCAACGCCATTGA | 1779 | 44.29 | MDSEDDLHYSTDVESVDDDCDFYSGEMDIGMGYYSDDDDPDAEDFVDDDTDDYFESRRREQNYMILNESDIRQRQEDDITRISSVLSISRVASIVLLRHFNWSVTKVHDEWFADEARVRKQVGLLEAPVVHVLNARERTCGICFESYPNSRIKSAACGHPFCAFCWEGYISTSINDGPGCLTLRCPDPSCGAVVDQDMINSLASNEDRKKYARYLLRSYVEDNKKTKWCPAPGCEHAVLFDAGNGNYDVSCFCTYGFCWKCTEEAHRPVDCATVEKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEVAKQDGVYDEAEKRREMAKNSLERYTHYYERWASNQTSRQKAMADLHQMQNVHIEKLSDIHCTPESQLKFITEAWLQIIECRRVLKWTYAYGYYLPEQEHAKRQFFEYLQGEAESGLERLHQCAEKELLQFLNAEGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVNSHGASSGTTSSKSTAGSSKGGRSGRGKGVSRTAGSTTRSGDSATHWSCEHCTFVNIRSATTCEMCHQRH | 592 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 14396679 | 14403453 | + | CrPI670011_08g004240.1 | Cre08g0424 | 505342 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre08g0424 | 592 | CDD | Rcat_RBR_ARI7-like | 294 | 348 | - | - | |
Cre08g0424 | 592 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 561 | 592 | IPR001876 | - | |
Cre08g0424 | 592 | Pfam | IBR domain, a half RING-finger domain | 209 | 271 | IPR002867 | GO:0008270(InterPro) | |
Cre08g0424 | 592 | CDD | RING-HC_ARI6-like | 137 | 198 | - | - | |
Cre08g0424 | 592 | SUPERFAMILY | RING/U-box | 290 | 338 | - | - | |
Cre08g0424 | 592 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 134 | 222 | IPR013083 | - | |
Cre08g0424 | 592 | SUPERFAMILY | RING/U-box | 210 | 278 | - | - | |
Cre08g0424 | 592 | ProSiteProfiles | TRIAD supradomain profile. | 136 | 349 | IPR044066 | - | |
Cre08g0424 | 592 | SMART | ibrneu5 | 209 | 271 | IPR002867 | GO:0008270(InterPro) | |
Cre08g0424 | 592 | SMART | ibrneu5 | 275 | 345 | IPR002867 | GO:0008270(InterPro) | |
Cre08g0424 | 592 | FunFam | RBR-type E3 ubiquitin transferase | 272 | 522 | - | - | |
Cre08g0424 | 592 | Pfam | Ariadne domain | 358 | 519 | IPR045840 | - | |
Cre08g0424 | 592 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
Cre08g0424 | 592 | SUPERFAMILY | Ran binding protein zinc finger-like | 565 | 590 | IPR036443 | - | |
Cre08g0424 | 592 | Pfam | IBR domain | 293 | 333 | - | - | |
Cre08g0424 | 592 | CDD | BRcat_RBR_ANKIB1 | 216 | 280 | - | - | |
Cre08g0424 | 592 | Gene3D | - | 267 | 522 | - | - | |
Cre08g0424 | 592 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Cre08g0424 | 592 | Pfam | E3 ubiquitin-protein ligase ARIH1, UBA-like domain | 73 | 112 | IPR048962 | - | |
Cre08g0424 | 592 | MobiDBLite | consensus disorder prediction | 523 | 567 | - | - | |
Cre08g0424 | 592 | MobiDBLite | consensus disorder prediction | 552 | 567 | - | - | |
Cre08g0424 | 592 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 91 | 398 | IPR031127 | GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER) | |
Cre08g0424 | 592 | Gene3D | - | 562 | 592 | - | - | |
Cre08g0424 | 592 | Coils | Coil | 357 | 377 | - | - | |
Cre08g0424 | 592 | ProSiteProfiles | Zinc finger RING-type profile. | 140 | 186 | IPR001841 | - | |
Cre08g0424 | 592 | SMART | zf_4 | 567 | 591 | IPR001876 | - | |
Cre08g0424 | 592 | ProSitePatterns | Zinc finger RanBP2-type signature. | 569 | 588 | IPR001876 | - | |
Cre08g0424 | 592 | MobiDBLite | consensus disorder prediction | 523 | 543 | - | - | |
Cre08g0424 | 592 | FunFam | RBR-type E3 ubiquitin transferase | 134 | 223 | - | - | |
Cre08g0424 | 592 | SUPERFAMILY | RING/U-box | 137 | 218 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre01g0670 | Cre-Chr1:6150736 | Cre08g0424 | Cre-Chr8:14396679 | 1.30E-49 | dispersed | |
Cre08g0424 | Cre-Chr8:14396679 | Cre11g1362 | Cre-Chr11:16497025 | 2.10E-140 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre08g0424 | K11968 | - | csv:101223037 | 1157.9 |