Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0434 ATGGGTTGTTTTCGACTACCGATTGGCTTCGATAAGGATCTGATGAGAATGATGGCTAAGTTTTGGTGGCAGTCAAATCCTGAGTCTAAAAAGATTCATTGGGCGTCCTTGGATAAACTTTGTCAATCCCGTGAAAATGGCGATTTGAATTTTAGAGATTTGGCCACTTTTAATCAGGCATTACTTACCAAATTGGATCCTTGGACCCCTAGACCAACGTCTTTCAAACCAGTGATGTTGAATTTTGGGACATCTGAAGTGAAAGTGTCTTCATTGTTGATTGATAGTGGCTCATGGGATGAGAATAAGCCTGGGATATTCCTTCGTTCTCGGGCTACACCAGGCCAGAGCGCGGCAACAAGCAGCTCAGATGTTGTCTTCAGAAGAACCCACGGGGAATTTTATCAATCCAATCTAGCTCTTACGTCGCCCATGTATCCAAAGCAAACTGGTTTGGGGGATGGACCAGTCTCCAGCCCACTACGCACAAGTGCTCGACCAAGGAGGAGGCCAATATCATATGGTCGTCCATATGTATATTATGGTTCTTCTGCAACCTTCAAACCCAACAAGAAAAGAACCCCAGCTACTAGAATTGCCAAGATGCTCCGTCCAAAGAAGCAACCCATGCCAACTGCTAATGCTGTTCCAGTTGAAAAAAATTTGCGGCGGTCTCAACGACAGAAGAGGAGGCGTACAAATTTTAGTGGTTACACAGATTCTGAAGATGAAGACTTAATGAGTCCCAAGTATAAAATGCTGAGGAGTCAGAGGGCTAATAACTCAAATAAAAATGTTTTTTCTTCTCCAAAGCATAAAAAAAGCATGGAGAACAGACCAACTCCTAGGCGTGAGGGATTACGACCGCGTCATTCACGATTAGTTTCTAGAGACCGCTTGAATTCAGAATCAGATGATGAACAAGGTAGCTCAGAAGATAAAGGAAGCCAAGATGAGATTGAGAATGGGAATGATATAGAGGATAATGATGTGGATGATATTCAAAATGATGATGAGGGTGAGCCTGAACCTGAGGATGAGGGTGAGGAAGATGGTGATGATGAAGGAGGTGAAGAAGAACAAGAGGGACGTAGACGATATGATCTTCGAAACCGTCCTGATGCTCGTAGACTCTCCATAGGTGAAGGTAAACCAAGACCAAGATCTCCTCGCAGAGTATTACATCAAGGAATGGGGACTAAGGTTGGAAGAGATGTAAGGAGGGGTGGATCAAGAGTTCATAAACGTCGTATGGCGAGGATTGAAGATTCTGATGATTCCCTTCTTGTGGATGAGCTGGACCAAGCTCCTGGTATACCATGGGCACGAGGTGGAAGTAGATCTGGCCCACCTTGGCTGTTTGGAGGATTGGACATGCATGGGACTGCGTCTTGGGGATTGAATATCGCAGCATCTGGTTGGGGTCACCAAAGTGATGCATTTTCGAGTTTAACTTCTGGTATTCAAACGGCTGGACCAAGCTCTAAGGGTGGGGCAGATATTCAACCTGTACAAGTTGATGAAAGTGTTAGCTTTGATGACATTGGTGGCTTGTCAGAATATATAGATGCTTTGAAGGAGATGGTATTCTTTCCTTTACTTTACCCCGATTTCTTTGCAAGTTATCATATAACCCCACCAAGAGGGGTGCTGTTATGTGGGCCTCCAGGTACTGGGAAAACATTAATTGCTAGAGCATTAGCCTGTGCTGCATCAAAGGCTGGCCAAAAGGTCAGTTTCTACATGCGGAAGGGTGCTGATGTTCTAAGCAAGTGGGTGGGTGAGGCTGAGCGACAATTGAAACTACTTTTTGAAGAAGCACAAAGGAATCAGCCTTCTATAATATTCTTTGATGAAATTGATGGGCTTGCTCCAGTTAGATCAAGCAAACAGGAGCAAATTCATAATTCCATCGTTTCCACATTGCTTGCTTTGATGGATGGGCTAGACTCTCGCGGTCAGGTTGTATTGATTGGAGCTACTAATCGGATTGATGCCATTGATGGAGCCCTACGCCGCCCCGGTCGTTTTGATCGTGAATTTAACTTTCCATTGCCTGGATGTGATGCACGTGCTGAGATCTTGACCATTCACACGCGCAAGTGGAAGAATCCTCCTTCAGAGGAGCTTCGATCAGAACTTGCTGCTACTTGTGTAGGTTATTGTGGTGCTGATTTGAAGGCTCTCTGCACTGAGGCTGCTATTCGAGCTTTCCGCCAAAAGTATCCTCAGGTTTACACCAGTGATGACAAGTTTCTAATAGATGTTGAATCTGTCAAGGTTGAGAAGTATCATTTTGTTGAAGCAATGTCCACAATTACTCCTGCTGCCCATCGAGGTGCTGTAGTGCATTCTCGGCCGCTATCTTCTGTAGTTGCACCATGTTTGCAAAGACATCTTCATAAAGCCATGATTTTCTTATCTGATGCCTTTCCATTAGCAGCATCATCTGAGTTTGCCAAACTGTCCATGCTTTCTTTTGGATCTGCAATTCCACTAGTGTGTAGACCACGACTTTTGCTTTGTGGTGGTGAAGACGTTGGGTTGGATCACCTTGGTCCTGCGATCTTACATGAACTGGAGAAATTTCCTGTTCATTCTCTGGGACTTCCGTCACTGCTTTCTGATCCTAGTGCAAAGACACCTGAGGAAGCATTGGTACATATATTTGGTGAAGCAAGGAGGACTACTCCATCGATACTCTACCTACCGCAGTTTCATCGTTGGTGGGAGACAGCAGATCAGCAGTTGAGAGCTGTTTTATTGACTCTGTTAGAGGAGCTACCTTCTGACCTACCCATATTACTGCTCGGAACATCCTTAGTCTCGCTTGTTGAAGTTGATGAGAAAGCTTCTATGATTTTTCCGGATCGCGGGATCTATCAAGTCAGTCCACCGTCCAGTGAAGATAAGTCTTTGTTTTTTACCCATTTAATTGAGGCTGCTTCCTCGGTTTTGCTGGAGGGCATGGATAAAAAAGTGCAAGTGTCTGGAACCCTTCCCGAGCTTCCCAAGGCTCCAGTGGTTGCCAGTGGACCAAAGGTTTCTGAGTTAAAAGCCAAGTTAGAAGCTGAACAGCATGCCCTTCGGCGTTTACGAATGTGTCTTAGAGATGTTTGCAACCGGATTTTATATGATAAAAGGTTTACTGTCTTCCATTACCCTGTTCTTGATGAGGATGCTCCCAATTACCGCTCAGTCGTCCAGAACCCAATGGACATGGCTACATTGCTTCAACGTGTTGACTCTGGACAGTATATTACATGTTCAGCATTTATTCAAGATGTCGATCTTATTGTTTCCAATGCGAAGGCTTATAATGGAGATGATTACAATGGTGCTAGGATTGTTAGCAGAGCTTACGAGCTTCGCGACGCTGTCCATGGAATGCTGACACAGATGGATCCCGCACTGGTTGCATTCTGTGACAATATAGCTGCCCAAGGTGGCCCGTTGAACGTGCCAGATGAACTTGGGGGAACTGTGTTTCCATCTGCCCCAGCTGTGCAGATGGGAACTGTTACTCGAGCTAGTGCTCGATTGCGTAATGTCCAGCCAGAGGTTGACTTCAATAGAAGTTACGAGGCATTAAAACGCCCAAAGAAGAATATGGATGCTGCTCATCATGCAGAAGAGAAAGCACCACCCCATCAAGATTCAGTTGCACCAAAACCATCCCAGGAGCCTGATACGAGCGAAGCAAGTCGTGAAAGTTCAAAAGCCTGTCTGGGTAGTGGGAATCAGCGTGATGCTTCTGGTGGAGAAGCTTCTGATCTCACCGATTGGAATGGTTCACAAGATGCGTCGGTATCAGATTGCTATATTTCGAACCAAGTTGAGTCAGTGAAGAATGTACTTGTGGAGCGAACAAGGAAGTATGGAATTCCAGAGCTTGAAAGACTATATACTCGAATAATGAAGGGTGTTTTCAAGATTAAAGATAAAGGAGGCAAGGATGATCCTAAGCATTCAATTTTGAAGTTTTTATTGAAATTTGCTGAGGATGAGTCTAATTTCTGA 4020 44.8 MGCFRLPIGFDKDLMRMMAKFWWQSNPESKKIHWASLDKLCQSRENGDLNFRDLATFNQALLTKLDPWTPRPTSFKPVMLNFGTSEVKVSSLLIDSGSWDENKPGIFLRSRATPGQSAATSSSDVVFRRTHGEFYQSNLALTSPMYPKQTGLGDGPVSSPLRTSARPRRRPISYGRPYVYYGSSATFKPNKKRTPATRIAKMLRPKKQPMPTANAVPVEKNLRRSQRQKRRRTNFSGYTDSEDEDLMSPKYKMLRSQRANNSNKNVFSSPKHKKSMENRPTPRREGLRPRHSRLVSRDRLNSESDDEQGSSEDKGSQDEIENGNDIEDNDVDDIQNDDEGEPEPEDEGEEDGDDEGGEEEQEGRRRYDLRNRPDARRLSIGEGKPRPRSPRRVLHQGMGTKVGRDVRRGGSRVHKRRMARIEDSDDSLLVDELDQAPGIPWARGGSRSGPPWLFGGLDMHGTASWGLNIAASGWGHQSDAFSSLTSGIQTAGPSSKGGADIQPVQVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRIDAIDGALRRPGRFDREFNFPLPGCDARAEILTIHTRKWKNPPSEELRSELAATCVGYCGADLKALCTEAAIRAFRQKYPQVYTSDDKFLIDVESVKVEKYHFVEAMSTITPAAHRGAVVHSRPLSSVVAPCLQRHLHKAMIFLSDAFPLAASSEFAKLSMLSFGSAIPLVCRPRLLLCGGEDVGLDHLGPAILHELEKFPVHSLGLPSLLSDPSAKTPEEALVHIFGEARRTTPSILYLPQFHRWWETADQQLRAVLLTLLEELPSDLPILLLGTSLVSLVEVDEKASMIFPDRGIYQVSPPSSEDKSLFFTHLIEAASSVLLEGMDKKVQVSGTLPELPKAPVVASGPKVSELKAKLEAEQHALRRLRMCLRDVCNRILYDKRFTVFHYPVLDEDAPNYRSVVQNPMDMATLLQRVDSGQYITCSAFIQDVDLIVSNAKAYNGDDYNGARIVSRAYELRDAVHGMLTQMDPALVAFCDNIAAQGGPLNVPDELGGTVFPSAPAVQMGTVTRASARLRNVQPEVDFNRSYEALKRPKKNMDAAHHAEEKAPPHQDSVAPKPSQEPDTSEASRESSKACLGSGNQRDASGGEASDLTDWNGSQDASVSDCYISNQVESVKNVLVERTRKYGIPELERLYTRIMKGVFKIKDKGGKDDPKHSILKFLLKFAEDESNF 1339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14631223 14646871 - CrPI670011_08g004340.1 Cre08g0434 505352

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0434 1339 FunFam ATPase family AAA domain-containing protein 2B 686 771 - -
Cre08g0434 1339 MobiDBLite consensus disorder prediction 147 175 - -
Cre08g0434 1339 MobiDBLite consensus disorder prediction 359 389 - -
Cre08g0434 1339 FunFam ATPase family, AAA domain-containing 2 508 691 - -
Cre08g0434 1339 SMART bromo_6 1029 1136 IPR001487 GO:0005515(InterPro)
Cre08g0434 1339 SMART AAA_5 546 687 IPR003593 GO:0016887(InterPro)
Cre08g0434 1339 MobiDBLite consensus disorder prediction 202 414 - -
Cre08g0434 1339 MobiDBLite consensus disorder prediction 1236 1263 - -
Cre08g0434 1339 FunFam ATPase family AAA domain-containing protein 1021 1149 - -
Cre08g0434 1339 MobiDBLite consensus disorder prediction 1192 1218 - -
Cre08g0434 1339 CDD Bromo_AAA 1029 1139 - -
Cre08g0434 1339 Gene3D - 1021 1149 IPR036427 GO:0005515(InterPro)
Cre08g0434 1339 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 508 773 IPR027417 -
Cre08g0434 1339 Pfam ATPase family associated with various cellular activities (AAA) 550 685 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cre08g0434 1339 MobiDBLite consensus disorder prediction 270 321 - -
Cre08g0434 1339 Pfam AAA+ lid domain 712 749 IPR041569 -
Cre08g0434 1339 MobiDBLite consensus disorder prediction 254 269 - -
Cre08g0434 1339 Pfam Bromodomain 1041 1110 IPR001487 GO:0005515(InterPro)
Cre08g0434 1339 PANTHER AAA DOMAIN-CONTAINING 201 821 IPR045199 GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0016887(PANTHER)|GO:0042393(PANTHER)|GO:0045944(PANTHER)
Cre08g0434 1339 Gene3D - 508 778 IPR027417 -
Cre08g0434 1339 SUPERFAMILY Bromodomain 1027 1139 IPR036427 GO:0005515(InterPro)
Cre08g0434 1339 PRINTS Bromodomain signature 1077 1095 IPR001487 GO:0005515(InterPro)
Cre08g0434 1339 PRINTS Bromodomain signature 1061 1077 IPR001487 GO:0005515(InterPro)
Cre08g0434 1339 PRINTS Bromodomain signature 1095 1114 IPR001487 GO:0005515(InterPro)
Cre08g0434 1339 MobiDBLite consensus disorder prediction 233 251 - -
Cre08g0434 1339 ProSitePatterns AAA-protein family signature. 655 673 IPR003960 GO:0005524(InterPro)|GO:0016887(InterPro)
Cre08g0434 1339 MobiDBLite consensus disorder prediction 1192 1263 - -
Cre08g0434 1339 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 834 980 IPR027417 -
Cre08g0434 1339 MobiDBLite consensus disorder prediction 322 358 - -
Cre08g0434 1339 ProSiteProfiles Bromodomain profile. 1052 1114 IPR001487 GO:0005515(InterPro)
Cre08g0434 1339 Gene3D - 686 771 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0434 K22531 - - csv:101203476 2120.12
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g0434 Cre-Chr8:14631223 Cre10g2132 Cre-Chr10:35913000 2.20E-60 dispersed
Cre08g0434 Cre-Chr8:14631223 Cre04g1016 Cre-Chr4:28772044 8.40E-60 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1203 . . . . . . . . Cmo08g00210 . . . . . . . . . . . . . . . Cla08g00471 Cam08g0895 . Cco08g0596 Clacu08g0614 . Cre08g0434 . . . Cone11ag0618 . . . . . Blo07g00085 Bda11g00455 . . Bpe13g00740 . Bma06g01415 . . . . . . . . Cpe17g01096 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009586 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 33