Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0455 ATGAACCTCACTACTCTTGTTTTCTGGATCATCCAGATCTCCATCCATGCAGTTCCAGTTTTTTCTAAAACCAAAGCGCCAGACGTTTCTGCGTTGAATGTGATGTTTAGTAGTTTAAATTCACCTTCACAACTCTCTGGTTGGGGTTCAAGTGGGGGTGATCCATGTGGGGATTCTTGGGAAGGGATCCAATGCTCAGGATCATCTGTCACTGAAATAAGTTTATCAGACTTTGGACTAAGTGGTTCAATGGGTTACCAGCTTTCAAATTTGGCAACTGTCACCTACTTTGATTTGAGCAAGAACAACCTCAATGGTGATATCCCCTATCAACTTCCCCCCAATGCAGTTCACATCGATCTTTCTGGGAACAGCTTCACTGGTAGTGTGCCTTATTCAATTTCTCAGATGGCTGATCTTGAATTTTTAAATCTTGGTCATAATAAGCTTAGCAACCAATTGAGTGACATGTTTGGCAAGCTTTCTAAACTCAAAAGGATGGATCTCTCATACAACTCAATTTCAGGAAACTTACCTCAAAGTTTTAAGAAGCTTTCAAGCCTTACTGTATTGCATATACAAGATAATAAATTTTCAGGTTCAATCAATGTTCTTGCTGACCTTCCACTTGATGATTTGAATGTTGCAAATAACAAATTCACCGGATGGATTCCTGAAAGTCTTGAAGATATAGATAATTTGGAAACTGTAGGAAATTCATGGTCATCTGGGCCAGCACCACCTCCACCACCAGGGACGGTATCTCCGAAAGGAAAGAACTCGAAGAAGGAGGAGTCGAACGGGAAATCGTCGGTGATAAGTGGGTTAGTGATAGCAGGAATAGCCATGGGAGTTTTAGCAATAATAGCAATAGTGATTGGATTTATGTCAAGAAGGCATAAATCCTTCACTCCTTCCCATTTTCTTGATGAAGACACAAGCCAACACAGATCCTTCACTCCACTCACATCCCAGGAACTCCCAAAGGGAAATTTGTACAATAATAATAATAATCATGCTAATAATAATACTAATAATGATAGAAAATCCTTCAATTCTGATGCCTCTGTTGACATAAAAGGTCTAAGTGTTGTTAGGCCACCTCCAGCTCCTTCTGATCCTGTTCAATCCTTCAGTGATAATCAATTTGCAAGCCGTTTGAATTCAAGGAGAAGCACTTCCTTTCGTGCCATTTCTCATTCTTTACTTGATTTGCAAACTGCCACTTCCAATTTTGCCCCTGCTCGCCTTCTCGGTGAGGGTACGATCGGACGTGTTTATAAGGCTAAGTATGGAGATGGAAAGGTATTGGCAGTGAAGAAGATAGATTCATCAGTTTTTCAAGGTAGAAGAACAGAGGAGTTTGGTGAAGTAGTTGGAATAATCTCAAAGCTTCATCACACAAACATTACAGAAGTGGTTGGGTTTTGTTCAGAGCAAGGACATCATTTGCTGATTTATGAATATTTCATGAATGGTTCACTTCATGAGTTTCTTCATATGTCTGATGACTTTAGTAAACCACTCACTTGGAACACTAGAGTCAGAATTGCTTTGGGGACTGCAAGAGCTCTTGAGTATCTTCACGAAGTTTGCTCACCATCCATAATTCACATGAATATCAAGTCCTCTAATATATTGCTTGATGCGGAACTTAATCCTCGTCTCTCAGATTATGGTTTGGCAACATTTTATAAGCATAGAAGCCAAAACCCTGGAGGAGGATATGATGCTCCAGAATGCCTAAAGGGTTCAAGTTATACAATGAAGAGTGATATTTACAGTTTGGGAGTGGTGATGTTGGAATTGTTGACTGGGCGGATGCCTTATGACTCTGGGAAAGCCAAAGTGGAACAATGTCTAGTAAGATGGGCAACACCACAGCTACATGACATAGATGCATTGGACAAAATGGTGGATCCTGCCTTGCGAGGTTTATATCCTCCAAAATCAGTGTCTAGATTTGCAGATATCATTGCCCTTTGCGTTCAATCAGAGCCTGAATTTAGGCCTCCCATGTCCGAAGTGGTTCAAGCCTTGGTTACTTTGGTTCAAAGATCAAGCATGAATATGAGAGATGATCTTGGAAACTCTCGACGAATGGATGATTATGACTATTAA 2121 40.45 MNLTTLVFWIIQISIHAVPVFSKTKAPDVSALNVMFSSLNSPSQLSGWGSSGGDPCGDSWEGIQCSGSSVTEISLSDFGLSGSMGYQLSNLATVTYFDLSKNNLNGDIPYQLPPNAVHIDLSGNSFTGSVPYSISQMADLEFLNLGHNKLSNQLSDMFGKLSKLKRMDLSYNSISGNLPQSFKKLSSLTVLHIQDNKFSGSINVLADLPLDDLNVANNKFTGWIPESLEDIDNLETVGNSWSSGPAPPPPPGTVSPKGKNSKKEESNGKSSVISGLVIAGIAMGVLAIIAIVIGFMSRRHKSFTPSHFLDEDTSQHRSFTPLTSQELPKGNLYNNNNNHANNNTNNDRKSFNSDASVDIKGLSVVRPPPAPSDPVQSFSDNQFASRLNSRRSTSFRAISHSLLDLQTATSNFAPARLLGEGTIGRVYKAKYGDGKVLAVKKIDSSVFQGRRTEEFGEVVGIISKLHHTNITEVVGFCSEQGHHLLIYEYFMNGSLHEFLHMSDDFSKPLTWNTRVRIALGTARALEYLHEVCSPSIIHMNIKSSNILLDAELNPRLSDYGLATFYKHRSQNPGGGYDAPECLKGSSYTMKSDIYSLGVVMLELLTGRMPYDSGKAKVEQCLVRWATPQLHDIDALDKMVDPALRGLYPPKSVSRFADIIALCVQSEPEFRPPMSEVVQALVTLVQRSSMNMRDDLGNSRRMDDYDY 706
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 15567662 15576750 - CrPI670011_08g004550.1 Cre08g0455 505373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0455 706 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 378 489 - -
Cre08g0455 706 ProSiteProfiles Protein kinase domain profile. 412 683 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre08g0455 706 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Cre08g0455 706 PANTHER LEUCINE RICH REPEAT KINASE 2 268 682 IPR051420 -
Cre08g0455 706 Gene3D Ribonuclease Inhibitor 25 255 IPR032675 -
Cre08g0455 706 Gene3D Transferase(Phosphotransferase) domain 1 490 703 - -
Cre08g0455 706 MobiDBLite consensus disorder prediction 307 352 - -
Cre08g0455 706 Pfam Leucine Rich Repeat 118 137 IPR001611 GO:0005515(InterPro)
Cre08g0455 706 MobiDBLite consensus disorder prediction 235 269 - -
Cre08g0455 706 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 25 252 - -
Cre08g0455 706 Gene3D Phosphorylase Kinase; domain 1 376 489 - -
Cre08g0455 706 MobiDBLite consensus disorder prediction 315 352 - -
Cre08g0455 706 Pfam Leucine rich repeat 156 198 IPR001611 GO:0005515(InterPro)
Cre08g0455 706 Pfam Protein kinase domain 415 678 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre08g0455 706 SUPERFAMILY L domain-like 27 236 - -
Cre08g0455 706 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 490 694 - -
Cre08g0455 706 SUPERFAMILY Protein kinase-like (PK-like) 392 680 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0871 Cre-Chr1:11709977 Cre08g0455 Cre-Chr8:15567662 1.20E-134 dispersed
Cre08g0455 Cre-Chr8:15567662 Cre09g0136 Cre-Chr9:1624505 1.10E-135 dispersed
Cre08g0455 Cre-Chr8:15567662 Cre07g1782 Cre-Chr7:33278222 4.70E-163 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64315 PF00069 Pkinase 3.80E-43 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0455 - - - 0.0