Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0455 ATGAACCTCACTACTCTTGTTTTCTGGATCATCCAGATCTCCATCCATGCAGTTCCAGTTTTTTCTAAAACCAAAGCGCCAGACGTTTCTGCGTTGAATGTGATGTTTAGTAGTTTAAATTCACCTTCACAACTCTCTGGTTGGGGTTCAAGTGGGGGTGATCCATGTGGGGATTCTTGGGAAGGGATCCAATGCTCAGGATCATCTGTCACTGAAATAAGTTTATCAGACTTTGGACTAAGTGGTTCAATGGGTTACCAGCTTTCAAATTTGGCAACTGTCACCTACTTTGATTTGAGCAAGAACAACCTCAATGGTGATATCCCCTATCAACTTCCCCCCAATGCAGTTCACATCGATCTTTCTGGGAACAGCTTCACTGGTAGTGTGCCTTATTCAATTTCTCAGATGGCTGATCTTGAATTTTTAAATCTTGGTCATAATAAGCTTAGCAACCAATTGAGTGACATGTTTGGCAAGCTTTCTAAACTCAAAAGGATGGATCTCTCATACAACTCAATTTCAGGAAACTTACCTCAAAGTTTTAAGAAGCTTTCAAGCCTTACTGTATTGCATATACAAGATAATAAATTTTCAGGTTCAATCAATGTTCTTGCTGACCTTCCACTTGATGATTTGAATGTTGCAAATAACAAATTCACCGGATGGATTCCTGAAAGTCTTGAAGATATAGATAATTTGGAAACTGTAGGAAATTCATGGTCATCTGGGCCAGCACCACCTCCACCACCAGGGACGGTATCTCCGAAAGGAAAGAACTCGAAGAAGGAGGAGTCGAACGGGAAATCGTCGGTGATAAGTGGGTTAGTGATAGCAGGAATAGCCATGGGAGTTTTAGCAATAATAGCAATAGTGATTGGATTTATGTCAAGAAGGCATAAATCCTTCACTCCTTCCCATTTTCTTGATGAAGACACAAGCCAACACAGATCCTTCACTCCACTCACATCCCAGGAACTCCCAAAGGGAAATTTGTACAATAATAATAATAATCATGCTAATAATAATACTAATAATGATAGAAAATCCTTCAATTCTGATGCCTCTGTTGACATAAAAGGTCTAAGTGTTGTTAGGCCACCTCCAGCTCCTTCTGATCCTGTTCAATCCTTCAGTGATAATCAATTTGCAAGCCGTTTGAATTCAAGGAGAAGCACTTCCTTTCGTGCCATTTCTCATTCTTTACTTGATTTGCAAACTGCCACTTCCAATTTTGCCCCTGCTCGCCTTCTCGGTGAGGGTACGATCGGACGTGTTTATAAGGCTAAGTATGGAGATGGAAAGGTATTGGCAGTGAAGAAGATAGATTCATCAGTTTTTCAAGGTAGAAGAACAGAGGAGTTTGGTGAAGTAGTTGGAATAATCTCAAAGCTTCATCACACAAACATTACAGAAGTGGTTGGGTTTTGTTCAGAGCAAGGACATCATTTGCTGATTTATGAATATTTCATGAATGGTTCACTTCATGAGTTTCTTCATATGTCTGATGACTTTAGTAAACCACTCACTTGGAACACTAGAGTCAGAATTGCTTTGGGGACTGCAAGAGCTCTTGAGTATCTTCACGAAGTTTGCTCACCATCCATAATTCACATGAATATCAAGTCCTCTAATATATTGCTTGATGCGGAACTTAATCCTCGTCTCTCAGATTATGGTTTGGCAACATTTTATAAGCATAGAAGCCAAAACCCTGGAGGAGGATATGATGCTCCAGAATGCCTAAAGGGTTCAAGTTATACAATGAAGAGTGATATTTACAGTTTGGGAGTGGTGATGTTGGAATTGTTGACTGGGCGGATGCCTTATGACTCTGGGAAAGCCAAAGTGGAACAATGTCTAGTAAGATGGGCAACACCACAGCTACATGACATAGATGCATTGGACAAAATGGTGGATCCTGCCTTGCGAGGTTTATATCCTCCAAAATCAGTGTCTAGATTTGCAGATATCATTGCCCTTTGCGTTCAATCAGAGCCTGAATTTAGGCCTCCCATGTCCGAAGTGGTTCAAGCCTTGGTTACTTTGGTTCAAAGATCAAGCATGAATATGAGAGATGATCTTGGAAACTCTCGACGAATGGATGATTATGACTATTAA 2121 40.45 MNLTTLVFWIIQISIHAVPVFSKTKAPDVSALNVMFSSLNSPSQLSGWGSSGGDPCGDSWEGIQCSGSSVTEISLSDFGLSGSMGYQLSNLATVTYFDLSKNNLNGDIPYQLPPNAVHIDLSGNSFTGSVPYSISQMADLEFLNLGHNKLSNQLSDMFGKLSKLKRMDLSYNSISGNLPQSFKKLSSLTVLHIQDNKFSGSINVLADLPLDDLNVANNKFTGWIPESLEDIDNLETVGNSWSSGPAPPPPPGTVSPKGKNSKKEESNGKSSVISGLVIAGIAMGVLAIIAIVIGFMSRRHKSFTPSHFLDEDTSQHRSFTPLTSQELPKGNLYNNNNNHANNNTNNDRKSFNSDASVDIKGLSVVRPPPAPSDPVQSFSDNQFASRLNSRRSTSFRAISHSLLDLQTATSNFAPARLLGEGTIGRVYKAKYGDGKVLAVKKIDSSVFQGRRTEEFGEVVGIISKLHHTNITEVVGFCSEQGHHLLIYEYFMNGSLHEFLHMSDDFSKPLTWNTRVRIALGTARALEYLHEVCSPSIIHMNIKSSNILLDAELNPRLSDYGLATFYKHRSQNPGGGYDAPECLKGSSYTMKSDIYSLGVVMLELLTGRMPYDSGKAKVEQCLVRWATPQLHDIDALDKMVDPALRGLYPPKSVSRFADIIALCVQSEPEFRPPMSEVVQALVTLVQRSSMNMRDDLGNSRRMDDYDY 706
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 15567662 15576750 - CrPI670011_08g004550.1 Cre08g0455 505373

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0455 706 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 378 489 - -
Cre08g0455 706 ProSiteProfiles Protein kinase domain profile. 412 683 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre08g0455 706 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Cre08g0455 706 PANTHER LEUCINE RICH REPEAT KINASE 2 268 682 IPR051420 -
Cre08g0455 706 Gene3D Ribonuclease Inhibitor 25 255 IPR032675 -
Cre08g0455 706 Gene3D Transferase(Phosphotransferase) domain 1 490 703 - -
Cre08g0455 706 MobiDBLite consensus disorder prediction 307 352 - -
Cre08g0455 706 Pfam Leucine Rich Repeat 118 137 IPR001611 GO:0005515(InterPro)
Cre08g0455 706 MobiDBLite consensus disorder prediction 235 269 - -
Cre08g0455 706 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 25 252 - -
Cre08g0455 706 Gene3D Phosphorylase Kinase; domain 1 376 489 - -
Cre08g0455 706 MobiDBLite consensus disorder prediction 315 352 - -
Cre08g0455 706 Pfam Leucine rich repeat 156 198 IPR001611 GO:0005515(InterPro)
Cre08g0455 706 Pfam Protein kinase domain 415 678 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre08g0455 706 SUPERFAMILY L domain-like 27 236 - -
Cre08g0455 706 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 490 694 - -
Cre08g0455 706 SUPERFAMILY Protein kinase-like (PK-like) 392 680 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0455 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0871 Cre-Chr1:11709977 Cre08g0455 Cre-Chr8:15567662 1.20E-134 dispersed
Cre08g0455 Cre-Chr8:15567662 Cre09g0136 Cre-Chr9:1624505 1.10E-135 dispersed
Cre08g0455 Cre-Chr8:15567662 Cre07g1782 Cre-Chr7:33278222 4.70E-163 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre02g0464 . 34 786 Strubbelig Receptor Gene Family AT4G03390 62.6 1.5e-205 713.4
Cre04g1889 . 17 730 Strubbelig Receptor Gene Family AT4G03390 51.8 7.8e-151 531.6
Cre09g0136 . 393 687 Strubbelig Receptor Gene Family AT4G03390 58.4 6.3e-92 335.9
Cre10g1853 . 1 704 Strubbelig Receptor Gene Family AT5G06820 51.5 2.9e-171 599.4
Cre08g0455 . 22 706 Strubbelig Receptor Gene Family AT1G78980 60.1 2.0e-193 672.9
Cre07g1782 . 164 853 Strubbelig Receptor Gene Family AT1G78980 50.9 4.4e-145 512.3
Cre09g0136 . 24 690 Strubbelig Receptor Gene Family AT1G78980 50.1 9.0e-122 434.9
Cre08g0455 . 20 684 Strubbelig Receptor Gene Family AT3G13065 54.1 5.5e-148 521.9
Cre01g0871 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.4 6.6e-85 312.4
Cre10g1853 . 1 704 Strubbelig Receptor Gene Family AT5G06820 51.5 2.9e-171 599.4
Cre02g0464 . 34 786 Strubbelig Receptor Gene Family AT4G03390 62.6 1.5e-205 713.4
Cre04g1889 . 17 730 Strubbelig Receptor Gene Family AT4G03390 51.8 7.8e-151 531.6
Cre09g0136 . 393 687 Strubbelig Receptor Gene Family AT4G03390 58.4 6.3e-92 335.9
Cre08g0455 . 20 684 Strubbelig Receptor Gene Family AT3G13065 54.1 5.5e-148 521.9
Cre08g0455 . 22 706 Strubbelig Receptor Gene Family AT1G78980 60.1 2.0e-193 672.9
Cre07g1782 . 164 853 Strubbelig Receptor Gene Family AT1G78980 50.9 4.4e-145 512.3
Cre09g0136 . 24 690 Strubbelig Receptor Gene Family AT1G78980 50.1 9.0e-122 434.9
Cre07g1782 . 159 853 Strubbelig Receptor Gene Family AT1G53730 60.5 5.9e-201 698.0
Cre09g0136 . 1 712 Strubbelig Receptor Gene Family AT1G53730 60.5 6.9e-186 647.9
Cre01g0871 . 9 689 Strubbelig Receptor Gene Family AT1G53730 50.7 1.8e-146 516.9
Cre07g1782 . 159 848 Strubbelig Receptor Gene Family AT3G14350 57.0 2.1e-179 626.3
Cre09g0136 . 6 702 Strubbelig Receptor Gene Family AT3G14350 55.4 1.4e-167 587.0
Cre01g0871 . 138 711 Strubbelig Receptor Gene Family AT4G22130 62.8 1.9e-178 622.9
Cre07g1782 . 532 860 Strubbelig Receptor Gene Family AT4G22130 63.7 5.2e-120 428.7
Cre09g0136 . 391 704 Strubbelig Receptor Gene Family AT4G22130 64.6 5.4e-117 418.7
Cre02g0464 . 483 788 Strubbelig Receptor Gene Family AT4G22130 59.9 3.8e-107 386.0
Cre04g1889 . 442 730 Strubbelig Receptor Gene Family AT4G22130 59.8 5.0e-99 359.0
Cre08g0455 . 359 706 Strubbelig Receptor Gene Family AT4G22130 51.8 6.6e-99 358.6
Cre10g1853 . 365 687 Strubbelig Receptor Gene Family AT4G22130 52.6 1.9e-93 340.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010758 0 1 1 1 0 1 2 0 0 1 1 1 2 1 0 2 1 1 2 1 1 0 1 0 0 1 1 0 0 1 24
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64315 PF00069 Pkinase 3.80E-43 CL0016 Cre PK