Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0462 ATGAGCTCCAATCATTTAGAGATGATGAGCAACCATTTTACAGTGGAGAACTCCAATCAAAGTGATCATCAAGGACCAATCAGCTCCATTAATCCTTTTTTCACTGAGAGCTTTTGTCTTGAAAAGTTTGCTTATTTTAATGAAATCCCTAGCTGTGTTCCACCTCCTCTTTACTCTTCATTTCCTACATTTAACAGAGAAGATCCCAAGAGGTTGGGAGGAAGAAAGAGGAAAAGAGAAAATGAAAGGGATGAGGAGAAGCCAAAAGAAGTGATTCATGTGCGGGCAAAAAGAGGTGAAGCTACTGATAGTCACAGTTTAGCAGAAAGGGTAAGAAGAGAGAAAATAAACCAGAGGCTGAGGTTCTTGCAGGACTTGGTTCCAGGATGCTACAAGACAATGGGAATGGCAGTTATGTTGGATGTGATCATAAATTACATCCAATCTCTGCAGAATCAGATTGAGTTTCTCTCCATGAAACTTTCAGTTGCTAGTCGCTACTATGATTTCAACAACAGCTCGGAGACTAATGTCGCCGAGATAATGCAGGCAACAAATGGGTGTGATGATATTCAAGAGATGCAGAGGATTGTACTTAGAGAAGAAGGGTATGGAGGGCCCTCTTACCACCACTCTACTTTTCCACCTCTCTAA 654 41.28 MSSNHLEMMSNHFTVENSNQSDHQGPISSINPFFTESFCLEKFAYFNEIPSCVPPPLYSSFPTFNREDPKRLGGRKRKRENERDEEKPKEVIHVRAKRGEATDSHSLAERVRREKINQRLRFLQDLVPGCYKTMGMAVMLDVIINYIQSLQNQIEFLSMKLSVASRYYDFNNSSETNVAEIMQATNGCDDIQEMQRIVLREEGYGGPSYHHSTFPPL 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 15932451 15938180 + CrPI670011_08g004620.1 Cre08g0462 505380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0462 217 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 75 177 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cre08g0462 217 CDD bHLH_AtBPE_like 90 174 - -
Cre08g0462 217 Gene3D - 97 168 IPR036638 GO:0046983(InterPro)
Cre08g0462 217 MobiDBLite consensus disorder prediction 68 90 - -
Cre08g0462 217 SMART finulus 106 156 IPR011598 GO:0046983(InterPro)
Cre08g0462 217 Pfam Helix-loop-helix DNA-binding domain 104 151 IPR011598 GO:0046983(InterPro)
Cre08g0462 217 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 98 169 IPR036638 GO:0046983(InterPro)
Cre08g0462 217 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 100 150 IPR011598 GO:0046983(InterPro)
Cre08g0462 217 MobiDBLite consensus disorder prediction 64 90 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1447 Cre-Chr1:27718479 Cre08g0462 Cre-Chr8:15932451 1.20E-37 dispersed
Cre05g1330 Cre-Chr5:14608794 Cre08g0462 Cre-Chr8:15932451 2.60E-31 dispersed
Cre07g2015 Cre-Chr7:35710948 Cre08g0462 Cre-Chr8:15932451 4.60E-08 dispersed
Cre08g0462 Cre-Chr8:15932451 Cre09g0809 Cre-Chr9:8075744 1.20E-27 dispersed
Cre08g0462 Cre-Chr8:15932451 Cre06g2342 Cre-Chr6:31363236 8.60E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54140 PF00010 HLH 6.40E-06 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0462 - - - 0.0