Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0476 ATGGTTTACTCCGACAAAATGCAAGAAATTGCATCCAAAATGGGTTTCACACTCTCCGATTTCGCCGATACTTTGGAACAAGAACGCCGTAAAGTCCTCATGTTTCAGCGCGAGCTCCCTCTCTGTTTGCAGCTCGTTTCCCATGCCATTGATTGTTGCAGGCAGCAGTTATCGGAGACGACGACGGAAAATCGTCAATCGGAATGCTCCGAGCAGACTTCCAGTGACATGGGTCCGGTTCTTGAGGAGTTCATTCCGATTAACAGAAATGGGGTTTCTGATTTTGAACAAACGGAGAAAAATAAGAATAACGACGACTCTGATTTAAACAATTTGAATTTGGCTCCGTCTGATTGGCTCAGATCTGCTCAGCTTTGGAACCAGACTTCAGATCCTCCTCCCCTGAATCAGGACCAGGCAGAGAACACGCCGGTTGTTGACGTCAACAGAAATGGCGGCGCTTTCCGGCCGTTTCAGAAGGAGAAAACCGGTAGCGCCGGCGGTGGAGGTGGGGCATCCTCGTCTTCAGCTCCGGCTCCGGCTGCGGAAACGAGCTCGACGACGGAGACGGGTTCAGGCGGAAGTAGCCGACGGGAAGAGAAGGAAGCGCAGAATCAGAGGAAACAAAGACGGTGCTGGTCGCCGGAGCTGCACCGGCGGTTCCTTCATGCGCTTCAGCAGCTCGGAGGTTCCCATGTGGCGACGCCGAAGCAAATAAGGGAATTGATGAAGGTGGATGGTCTTACCAACGACGAAGTGAAAAGTCATCTACAGAAGTATCGTCTGCACACGAGACGGCCAACTCCGACGATCCACAATAACGAGAGCGGCCACGCGCCTCAGTTCCTGGTGGTTGGCGGCATATGGGTACCGGCAGCCGAGTACGCCGCCATGTCCACCACCACTTCCTCGGGAGAAGCAGTCAGCGCCGCTACCACGAACGGAATTTATGCACCGGTGGCAGCAGCGGCAGCGCCGCATCCATTACCCAGCACAGTCCAAAAGCCCAAACCCAAGATCCCTTCCTCCGCAGCCGTCGCCGCCGCCGAATCTAATTCTCCGACTACATCTTCCTCTACTCATACGTCTTCAGTTTCACCAGCTGCCTCTTGA 1113 54.18 MVYSDKMQEIASKMGFTLSDFADTLEQERRKVLMFQRELPLCLQLVSHAIDCCRQQLSETTTENRQSECSEQTSSDMGPVLEEFIPINRNGVSDFEQTEKNKNNDDSDLNNLNLAPSDWLRSAQLWNQTSDPPPLNQDQAENTPVVDVNRNGGAFRPFQKEKTGSAGGGGGASSSSAPAPAAETSSTTETGSGGSSRREEKEAQNQRKQRRCWSPELHRRFLHALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPTPTIHNNESGHAPQFLVVGGIWVPAAEYAAMSTTTSSGEAVSAATTNGIYAPVAAAAAPHPLPSTVQKPKPKIPSSAAVAAAESNSPTTSSSTHTSSVSPAAS 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16373136 16376103 + CrPI670011_08g004760.1 Cre08g0476 505394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0476 370 MobiDBLite consensus disorder prediction 126 146 - -
Cre08g0476 370 MobiDBLite consensus disorder prediction 346 370 - -
Cre08g0476 370 MobiDBLite consensus disorder prediction 126 212 - -
Cre08g0476 370 MobiDBLite consensus disorder prediction 327 370 - -
Cre08g0476 370 Gene3D - 207 265 - -
Cre08g0476 370 MobiDBLite consensus disorder prediction 168 193 - -
Cre08g0476 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 205 265 IPR017930 -
Cre08g0476 370 NCBIfam myb-like DNA-binding domain, SHAQKYF class 208 263 IPR006447 GO:0003677(InterPro)
Cre08g0476 370 MobiDBLite consensus disorder prediction 194 212 - -
Cre08g0476 370 FunFam Myb family transcription factor 207 265 - -
Cre08g0476 370 Pfam Myb-like DNA-binding domain 210 261 IPR001005 -
Cre08g0476 370 SUPERFAMILY Homeodomain-like 206 266 IPR009057 -
Cre08g0476 370 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 12 342 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1910 Cre-Chr6:25916244 Cre08g0476 Cre-Chr8:16373136 2.20E-39 dispersed
Cre08g0476 Cre-Chr8:16373136 Cre11g0755 Cre-Chr11:4765142 3.70E-42 dispersed
Cre05g1697 Cre-Chr5:28482006 Cre08g0476 Cre-Chr8:16373136 8.30E-29 transposed
Cre05g2473 Cre-Chr5:36111059 Cre08g0476 Cre-Chr8:16373136 1.50E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54141 PF00249 Myb_DNA-binding 1.60E-06 CL0123 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0476 - - - 0.0