Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre08g0479 | ATGTTCAACAATGGTCTGTCTTTAAACGCCATTGTTTCGCTTTGTAAAGTCGAAGAAGAGGAAGAAGAAAAAGGAAAAGACGAAAAAAGGTTCGAAAATGGTGGATTAGACGTTGGAGATAGAAACGAAGAAATTGCTTTCAATTGCTCTGCTTTTACTACTTGTTTCTTACCTGTGAAAGAGAAACAAAAAGTGTGGGGGTGGGTGTTGTTATTTCAAGTAAATATGCAGAGCTTTGAAAACCCAGAACAGTTCTATGCCCATTCTTCTTCTTCTTCTTCAATTTTTCTTCGGGGAGACGACAGTGGGCGATTCCATACGCGTTTTCTTCCGGATATTGAGGAACTTCAACAATCAGCTGCTGCTATTGCTGCTTTTCATCAAGATGATGCTGTTGATTTAAGCCCAAGCTCTGTTTTCAGTTTAAAATCGACCCACAATACAGCTTTTCCAATCCACCTACCGTACGGGAATACGGATGTGGGTTCAATAGGAAGAACAGGGTATTTGGACACAGGACAGGAATTGATGCGGTTGAAGAGGCTGGCTCCGCCGCAGTCGGTGGCGGTGACGGTGGCAGCTTCGTCATCGTTGGGAAACGGGAGCTTTGAGAACTGGGGAGAGTCAGCCATGGCAGATAATAGCCAGCAGACTGACACTTCCACAGACATCGACACTGATGAAAGAAACCAGTTTCAAGGAGCTGCACATGGAGCTCTCATGGCGGTGGACTCCATGGATCAATCTAAACCAAAATCTGCAGATCAGAAGACTCTTCGTAGACTTGCTCAGAATCGAGAAGCAGCCAGGAAGAGTCGACTGAGGAAGAAAGCATATGTCCAGCAGCTGGAAAATAGTCGACAGAGGCTTGCACAGCTAGAGCAGGAGCTTCATCGAGCACGCCAACAGGGCATTTTTGTGGCTTCCGGGGCAGGAGATCATTGTGCATCAATGGCAGGAAATGGTGCATTGGCATTTGATCTCGACTATGCACGTTGGCTTGACGAGCATCAACGGCTGATCAATGATTTGAGAGCATCTGCAAATTCTCAGTTGGGGGACGACGAATTGAGATTTCTTGTTGATGGGGTGATGGCACATTATGACGAACTCTTCAAGCTGAAAAGTGTAGGTGCTAAGGCCGATGTATTCCACATTCTTTCGGGCATGTGGAAGACTCCTGCTGAGAGGTGTTTCATGTGGCTGGGAGGATTCCGTTCATCCGAGCTTCTAAAGATAGTAGGGAGCCATTTGGAGCCTCTAACAGATCAGCAGTTGATGGGTATCTGCAATTTGCAGCAATCTTCCCAACAAGCTGAAGATGCATTGTCGCAAGGAATTGAAGCTTTGCAACAATCTCTTGTAGAAACTCTTTCCACTGCTTCTTTAGGTCCAGCCAGTTCAGGAAATGTTGCTGATTACATGGGCCAAATGGCGATCGCGATGAGCAAGCTAACAACGCTCGAGAACTTTCTACATCAGGCGGATCTTCTGAGGCAGCAAACACTCCAACAGATGCATCGGATATTAACTACTCGTCAAGCTGCACGAGCACTTCTTGTGATCAGCGATTACATTTCACGTCTTCGAGCTCTCAGTTCTCTGTGGAAAAGTGGAAAACAATACCCAACAGATGAACCAGTAGCTGATCTTAATGATAATAAAGGAAGTACTTTGGCCTAA | 1683 | 45.75 | MFNNGLSLNAIVSLCKVEEEEEEKGKDEKRFENGGLDVGDRNEEIAFNCSAFTTCFLPVKEKQKVWGWVLLFQVNMQSFENPEQFYAHSSSSSSIFLRGDDSGRFHTRFLPDIEELQQSAAAIAAFHQDDAVDLSPSSVFSLKSTHNTAFPIHLPYGNTDVGSIGRTGYLDTGQELMRLKRLAPPQSVAVTVAASSSLGNGSFENWGESAMADNSQQTDTSTDIDTDERNQFQGAAHGALMAVDSMDQSKPKSADQKTLRRLAQNREAARKSRLRKKAYVQQLENSRQRLAQLEQELHRARQQGIFVASGAGDHCASMAGNGALAFDLDYARWLDEHQRLINDLRASANSQLGDDELRFLVDGVMAHYDELFKLKSVGAKADVFHILSGMWKTPAERCFMWLGGFRSSELLKIVGSHLEPLTDQQLMGICNLQQSSQQAEDALSQGIEALQQSLVETLSTASLGPASSGNVADYMGQMAIAMSKLTTLENFLHQADLLRQQTLQQMHRILTTRQAARALLVISDYISRLRALSSLWKSGKQYPTDEPVADLNDNKGSTLA | 560 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 16493460 | 16498149 | + | CrPI670011_08g004790.1 | Cre08g0479 | 505397 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre08g0479 | 560 | CDD | bZIP_HBP1b-like | 257 | 309 | - | - | |
Cre08g0479 | 560 | Pfam | bZIP transcription factor | 256 | 296 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre08g0479 | 560 | Gene3D | - | 256 | 305 | - | - | |
Cre08g0479 | 560 | Pfam | Seed dormancy control | 341 | 414 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Cre08g0479 | 560 | Coils | Coil | 276 | 303 | - | - | |
Cre08g0479 | 560 | FunFam | BZIP family transcription factor | 256 | 305 | - | - | |
Cre08g0479 | 560 | SUPERFAMILY | Leucine zipper domain | 257 | 300 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre08g0479 | 560 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 260 | 275 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre08g0479 | 560 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 255 | 299 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre08g0479 | 560 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 213 | 539 | - | - | |
Cre08g0479 | 560 | ProSiteProfiles | DOG1 domain profile. | 323 | 539 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Cre08g0479 | 560 | SMART | brlzneu | 253 | 324 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre08g0479 | Cre-Chr8:16493460 | Cre08g1009 | Cre-Chr8:23189625 | 3.80E-115 | dispersed | |
Cre08g0479 | Cre-Chr8:16493460 | Cre01g1119 | Cre-Chr1:20413933 | 8.30E-86 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54142 | PF14144 | DOG1 | 2.40E-29 | No_clan | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre08g0479 | K14431 | - | csv:101210308 | 835.099 |