Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0479 ATGTTCAACAATGGTCTGTCTTTAAACGCCATTGTTTCGCTTTGTAAAGTCGAAGAAGAGGAAGAAGAAAAAGGAAAAGACGAAAAAAGGTTCGAAAATGGTGGATTAGACGTTGGAGATAGAAACGAAGAAATTGCTTTCAATTGCTCTGCTTTTACTACTTGTTTCTTACCTGTGAAAGAGAAACAAAAAGTGTGGGGGTGGGTGTTGTTATTTCAAGTAAATATGCAGAGCTTTGAAAACCCAGAACAGTTCTATGCCCATTCTTCTTCTTCTTCTTCAATTTTTCTTCGGGGAGACGACAGTGGGCGATTCCATACGCGTTTTCTTCCGGATATTGAGGAACTTCAACAATCAGCTGCTGCTATTGCTGCTTTTCATCAAGATGATGCTGTTGATTTAAGCCCAAGCTCTGTTTTCAGTTTAAAATCGACCCACAATACAGCTTTTCCAATCCACCTACCGTACGGGAATACGGATGTGGGTTCAATAGGAAGAACAGGGTATTTGGACACAGGACAGGAATTGATGCGGTTGAAGAGGCTGGCTCCGCCGCAGTCGGTGGCGGTGACGGTGGCAGCTTCGTCATCGTTGGGAAACGGGAGCTTTGAGAACTGGGGAGAGTCAGCCATGGCAGATAATAGCCAGCAGACTGACACTTCCACAGACATCGACACTGATGAAAGAAACCAGTTTCAAGGAGCTGCACATGGAGCTCTCATGGCGGTGGACTCCATGGATCAATCTAAACCAAAATCTGCAGATCAGAAGACTCTTCGTAGACTTGCTCAGAATCGAGAAGCAGCCAGGAAGAGTCGACTGAGGAAGAAAGCATATGTCCAGCAGCTGGAAAATAGTCGACAGAGGCTTGCACAGCTAGAGCAGGAGCTTCATCGAGCACGCCAACAGGGCATTTTTGTGGCTTCCGGGGCAGGAGATCATTGTGCATCAATGGCAGGAAATGGTGCATTGGCATTTGATCTCGACTATGCACGTTGGCTTGACGAGCATCAACGGCTGATCAATGATTTGAGAGCATCTGCAAATTCTCAGTTGGGGGACGACGAATTGAGATTTCTTGTTGATGGGGTGATGGCACATTATGACGAACTCTTCAAGCTGAAAAGTGTAGGTGCTAAGGCCGATGTATTCCACATTCTTTCGGGCATGTGGAAGACTCCTGCTGAGAGGTGTTTCATGTGGCTGGGAGGATTCCGTTCATCCGAGCTTCTAAAGATAGTAGGGAGCCATTTGGAGCCTCTAACAGATCAGCAGTTGATGGGTATCTGCAATTTGCAGCAATCTTCCCAACAAGCTGAAGATGCATTGTCGCAAGGAATTGAAGCTTTGCAACAATCTCTTGTAGAAACTCTTTCCACTGCTTCTTTAGGTCCAGCCAGTTCAGGAAATGTTGCTGATTACATGGGCCAAATGGCGATCGCGATGAGCAAGCTAACAACGCTCGAGAACTTTCTACATCAGGCGGATCTTCTGAGGCAGCAAACACTCCAACAGATGCATCGGATATTAACTACTCGTCAAGCTGCACGAGCACTTCTTGTGATCAGCGATTACATTTCACGTCTTCGAGCTCTCAGTTCTCTGTGGAAAAGTGGAAAACAATACCCAACAGATGAACCAGTAGCTGATCTTAATGATAATAAAGGAAGTACTTTGGCCTAA 1683 45.75 MFNNGLSLNAIVSLCKVEEEEEEKGKDEKRFENGGLDVGDRNEEIAFNCSAFTTCFLPVKEKQKVWGWVLLFQVNMQSFENPEQFYAHSSSSSSIFLRGDDSGRFHTRFLPDIEELQQSAAAIAAFHQDDAVDLSPSSVFSLKSTHNTAFPIHLPYGNTDVGSIGRTGYLDTGQELMRLKRLAPPQSVAVTVAASSSLGNGSFENWGESAMADNSQQTDTSTDIDTDERNQFQGAAHGALMAVDSMDQSKPKSADQKTLRRLAQNREAARKSRLRKKAYVQQLENSRQRLAQLEQELHRARQQGIFVASGAGDHCASMAGNGALAFDLDYARWLDEHQRLINDLRASANSQLGDDELRFLVDGVMAHYDELFKLKSVGAKADVFHILSGMWKTPAERCFMWLGGFRSSELLKIVGSHLEPLTDQQLMGICNLQQSSQQAEDALSQGIEALQQSLVETLSTASLGPASSGNVADYMGQMAIAMSKLTTLENFLHQADLLRQQTLQQMHRILTTRQAARALLVISDYISRLRALSSLWKSGKQYPTDEPVADLNDNKGSTLA 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16493460 16498149 + CrPI670011_08g004790.1 Cre08g0479 505397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0479 560 CDD bZIP_HBP1b-like 257 309 - -
Cre08g0479 560 Pfam bZIP transcription factor 256 296 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g0479 560 Gene3D - 256 305 - -
Cre08g0479 560 Pfam Seed dormancy control 341 414 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cre08g0479 560 Coils Coil 276 303 - -
Cre08g0479 560 FunFam BZIP family transcription factor 256 305 - -
Cre08g0479 560 SUPERFAMILY Leucine zipper domain 257 300 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g0479 560 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 260 275 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g0479 560 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 255 299 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g0479 560 PANTHER TRANSCRIPTION FACTOR TGA9 213 539 - -
Cre08g0479 560 ProSiteProfiles DOG1 domain profile. 323 539 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cre08g0479 560 SMART brlzneu 253 324 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g0479 Cre-Chr8:16493460 Cre08g1009 Cre-Chr8:23189625 3.80E-115 dispersed
Cre08g0479 Cre-Chr8:16493460 Cre01g1119 Cre-Chr1:20413933 8.30E-86 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54142 PF14144 DOG1 2.40E-29 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0479 K14431 - csv:101210308 835.099