Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0513 ATGAAGTTTCTCACATTGCTCTCCCTTTTATTATCACTTCTCACTAAGCTAAAGATCAAGATGGGTGAGAATTCTATTGTGAGTAAGTTGAAGCCTTATATTCTAGTGGTGAGCCTACAATTTGGAATTGCAGGCATATATGTAATATGCATGGCCACTCTCACCAAAGGCATGAGTCGTTATGTTTTGATCGTGTATCGAAACACTGTTGCTGCTCTCTTTCTCGCTCCGTTCGCGCTAATCTTCGAAAGGAAAACAAGACCAAAGATGACACTCCCTGTCGCTTTACAAATCATGGTCTTAGGTTTTCTAGAACCAGTTGTGGATCAAGGGTTTGGTTATCTAGGAATGATGTACACGTCAGCATCATTTGCATCGGCCATCATGAACGCTGTGCCTTCTGTTACCTTTATCATTGCAGTCATTTTTCGGGTGGAGCATCTAAATATAAAACAAGTACGAGGGGTAGCCAAAGTAATTGGCACTTTAGTGACCTTTGCTGGAGCTTTGGTTATGACACTTTACAAAGGCCCAATTCTTGAATTCTTTTGGACACAAAAAACCAACCACCATGTTAACAGCGGCGCCGCCGCAGCCAATCAGCACTGGGTGGCCGGAACTTTGTTCATCCTTCTGGGCTGCGTGTCTTGGTCTTGTTTCTACATATTACAATCTATAACAGTGAAGAGATACCCAGCGGAGCTGTCTCTGTCGGCATTGATATGCTTGGCCGGTGCACTTCAAAGCACAGTGATAGCAGTAGCTATAGAGCATCGTCCTAGCGCATGGGCTGTGGGTTGGGACTCTAGGCTTCTAGCTCCTCTCTATACGGGAATAGTTGGATCAGGAATTGCATATTACTTTCAAGCTATAGTTATGAAGACAAGAGGTCCTGTATTTGTGACGGCTTTCAACCCTTTATGTATGATTGTCGTCACTATTATCTCCTCTATTGTTCTCGCCGAGAAGATTCGTCTTGGAAGCGTGATTGGAGCCATTATCATCGCACTTGGGCTTTATTCAGTCGTTTGGGGAAAAAGCAAGGATTATTCCACTGCCGGCAACACTCAAAAGCCTAACGCCGCCGTGTCGGAGCTTCCAATTACTGCCTCTCAACTCCCAACCGAACAAGATGTTCATCTTCAACCTCCAAAATGA 1158 44.39 MKFLTLLSLLLSLLTKLKIKMGENSIVSKLKPYILVVSLQFGIAGIYVICMATLTKGMSRYVLIVYRNTVAALFLAPFALIFERKTRPKMTLPVALQIMVLGFLEPVVDQGFGYLGMMYTSASFASAIMNAVPSVTFIIAVIFRVEHLNIKQVRGVAKVIGTLVTFAGALVMTLYKGPILEFFWTQKTNHHVNSGAAAANQHWVAGTLFILLGCVSWSCFYILQSITVKRYPAELSLSALICLAGALQSTVIAVAIEHRPSAWAVGWDSRLLAPLYTGIVGSGIAYYFQAIVMKTRGPVFVTAFNPLCMIVVTIISSIVLAEKIRLGSVIGAIIIALGLYSVVWGKSKDYSTAGNTQKPNAAVSELPITASQLPTEQDVHLQPPK 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17683883 17691113 + CrPI670011_08g005130.1 Cre08g0513 505431

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0513 385 SUPERFAMILY Multidrug resistance efflux transporter EmrE 66 175 - -
Cre08g0513 385 PANTHER WAT1-RELATED PROTEIN 34 355 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Cre08g0513 385 SUPERFAMILY Multidrug resistance efflux transporter EmrE 263 347 - -
Cre08g0513 385 Pfam EamA-like transporter family 206 343 IPR000620 GO:0016020(InterPro)
Cre08g0513 385 Pfam EamA-like transporter family 42 161 IPR000620 GO:0016020(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0513 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g0513 Cre-Chr8:17683883 Cre10g1762 Cre-Chr10:32014096 8.20E-93 dispersed
Cre11g1981 Cre-Chr11:31568705 Cre08g0513 Cre-Chr8:17683883 2.80E-106 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g284 . Blo12g00672 . . Bpe02g00072 . . Bma01g02646 Cmo04g02464 . . Cma09g00799 . . . . . Bhi04g01968 . . . Hepe03g1048 . . Cla08g00578 Cam08g0993 Cec08g0581 Cco08g0692 Clacu08g0702 . Cre08g0513 . . . . . Csa04g01808 . Cme03g00574 Blo17g00181 . . . . . . . . . Cmo09g00792 . . . Car09g00716 . . Bhi09g02666 . . . . Mch11g0824 . . . . . . . . Lsi08g00420 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre07g1467 . 1 755 Nodulin-like Gene Family AT4G19180 59.9 1.1e-242 836.6
Cre11g2016 . 75 335 Nodulin-like Gene Family AT3G45870 70.5 2.5e-99 359.0
Cre01g0575 . 33 392 Nodulin-like Gene Family AT3G28050 58.8 3.6e-114 408.7
Cre01g0575 . 148 354 Nodulin-like Gene Family AT3G28080 50.2 1.0e-50 197.2
Cre10g0506 . 2 335 Nodulin-like Gene Family AT5G47470 60.9 3.5e-104 375.6
Cre09g2110 . 1 338 Nodulin-like Gene Family AT5G47470 58.1 5.7e-102 368.2
Cre01g0575 . 31 354 Nodulin-like Gene Family AT5G40230 54.0 3.9e-92 335.5
Cre01g0575 . 11 354 Nodulin-like Gene Family AT5G40240 51.4 4.3e-91 332.0
Cre10g1586 . 6 364 Nodulin-like Gene Family AT5G40240 50.1 4.8e-90 328.6
Cre10g1584 . 12 335 Nodulin-like Gene Family AT5G40240 50.8 6.7e-84 308.1
Cre05g2033 . 16 274 Nodulin-like Gene Family AT3G53210 60.6 5.6e-85 311.2
Cre08g1412 . 16 282 Nodulin-like Gene Family AT3G53210 57.7 1.6e-84 309.7
Cre06g2320 . 357 593 Nodulin-like Gene Family AT3G53210 50.2 3.4e-66 248.8
Cre04g0938 . 99 360 Nodulin-like Gene Family AT2G37450 59.8 2.0e-82 302.8
Cre07g0671 . 98 332 Nodulin-like Gene Family AT2G37450 57.0 1.3e-68 256.9
Cre07g0673 . 98 334 Nodulin-like Gene Family AT2G37450 55.3 4.1e-67 251.9
Cre11g1981 . 104 336 Nodulin-like Gene Family AT2G37450 54.5 7.2e-64 241.1
Cre01g0460 . 100 333 Nodulin-like Gene Family AT2G37450 51.1 1.3e-60 230.3
Cre04g0938 . 12 338 Nodulin-like Gene Family AT2G37460 67.6 9.8e-123 437.2
Cre07g0673 . 11 334 Nodulin-like Gene Family AT2G37460 57.4 6.2e-101 364.8
Cre07g0671 . 11 332 Nodulin-like Gene Family AT2G37460 57.5 2.2e-98 356.3
Cre11g1981 . 16 343 Nodulin-like Gene Family AT2G37460 54.8 4.2e-97 352.1
Cre08g0513 . 23 350 Nodulin-like Gene Family AT2G37460 50.8 3.3e-94 342.4
Cre01g0460 . 10 333 Nodulin-like Gene Family AT2G37460 55.7 2.8e-93 339.3
Cre04g0633 . 13 362 Nodulin-like Gene Family AT2G37460 50.1 3.1e-92 335.9
Cre01g0458 . 8 331 Nodulin-like Gene Family AT2G37460 52.8 6.9e-92 334.7
Cre10g1762 . 12 342 Nodulin-like Gene Family AT2G37460 52.7 1.6e-88 323.6
Cre08g1412 . 4 395 Nodulin-like Gene Family AT1G75500 72.5 5.5e-161 564.3
Cre05g2033 . 1 388 Nodulin-like Gene Family AT1G75500 73.0 6.5e-154 540.8
Cre06g2320 . 357 666 Nodulin-like Gene Family AT1G75500 63.0 8.8e-111 397.5
Cre05g2679 . 1 366 Nodulin-like Gene Family AT1G60050 50.8 8.5e-95 344.4
Cre07g0673 . 8 361 Nodulin-like Gene Family AT2G39510 59.3 7.2e-118 421.0
Cre07g0671 . 12 341 Nodulin-like Gene Family AT2G39510 61.9 1.4e-113 406.8
Cre04g0938 . 13 345 Nodulin-like Gene Family AT2G39510 60.5 1.7e-111 399.8
Cre01g0458 . 8 343 Nodulin-like Gene Family AT2G39510 56.2 8.8e-108 387.5
Cre01g0460 . 13 334 Nodulin-like Gene Family AT2G39510 59.5 2.4e-105 379.4
Cre11g1981 . 18 335 Nodulin-like Gene Family AT2G39510 57.3 6.3e-98 354.8
Cre04g0633 . 16 339 Nodulin-like Gene Family AT2G39510 52.0 1.0e-92 337.4
Cre10g1762 . 15 349 Nodulin-like Gene Family AT2G39510 50.9 2.6e-91 332.8
Cre11g1745 . 13 350 Nodulin-like Gene Family AT2G39510 50.3 6.3e-90 328.2
Cre08g0513 . 22 277 Nodulin-like Gene Family AT4G08290 63.8 1.3e-87 320.1
Cre11g1981 . 14 263 Nodulin-like Gene Family AT4G08290 53.3 1.8e-73 273.1
Cre11g1981 . 12 355 Nodulin-like Gene Family AT4G08300 66.6 6.0e-125 444.5
Cre08g0513 . 27 376 Nodulin-like Gene Family AT4G08300 50.7 6.1e-93 338.2
Cre04g0938 . 13 332 Nodulin-like Gene Family AT4G08300 50.2 6.1e-85 311.6
Cre02g0416 . 9 260 Nodulin-like Gene Family AT5G64700 60.7 1.5e-77 286.6
Cre02g0415 . 1 234 Nodulin-like Gene Family AT5G64700 59.8 1.3e-68 256.9
Cre04g1198 . 1 236 Nodulin-like Gene Family AT5G64700 52.9 2.2e-60 229.6
Cre11g1698 . 1 368 Nodulin-like Gene Family AT4G30420 53.5 1.8e-103 373.2
Cre11g1745 . 6 408 Nodulin-like Gene Family AT5G07050 62.9 6.1e-139 491.1
Cre10g1762 . 10 342 Nodulin-like Gene Family AT5G07050 68.3 8.2e-128 454.1
Cre04g0633 . 10 339 Nodulin-like Gene Family AT5G07050 64.6 1.8e-122 436.4
Cre11g1981 . 18 336 Nodulin-like Gene Family AT5G07050 51.8 1.3e-93 340.5
Cre01g0458 . 8 331 Nodulin-like Gene Family AT5G07050 50.8 2.3e-85 313.2
Cre04g0633 . 13 357 Nodulin-like Gene Family AT3G56620 58.3 8.3e-106 380.9
Cre11g1745 . 14 338 Nodulin-like Gene Family AT3G56620 56.4 4.4e-99 358.6
Cre05g2679 . 1 372 Nodulin-like Gene Family AT1G70260 55.4 6.3e-106 381.3
Cre01g0985 . 3 331 Nodulin-like Gene Family AT1G09380 61.8 3.8e-111 398.7
Cre02g1796 . 1 332 Nodulin-like Gene Family AT1G09380 58.4 1.1e-110 397.1
Cre04g0633 . 13 352 Nodulin-like Gene Family AT2G40900 60.3 6.4e-109 391.3
Cre10g1762 . 12 347 Nodulin-like Gene Family AT2G40900 56.0 3.0e-106 382.5
Cre11g1745 . 14 333 Nodulin-like Gene Family AT2G40900 56.9 3.2e-100 362.5
Cre06g2320 . 359 684 Nodulin-like Gene Family AT3G18200 69.1 1.6e-120 429.9
Cre08g1412 . 16 360 Nodulin-like Gene Family AT3G18200 57.7 6.9e-108 387.9
Cre05g2033 . 16 354 Nodulin-like Gene Family AT3G18200 54.6 4.1e-100 362.1
Cre11g1981 . 12 355 Nodulin-like Gene Family AT1G44800 64.9 3.3e-123 438.7
Cre08g0513 . 27 369 Nodulin-like Gene Family AT1G44800 51.3 8.5e-95 344.4
Cre04g0633 . 12 339 Nodulin-like Gene Family AT1G44800 50.6 1.0e-87 320.9
Cre11g2016 . 159 429 Nodulin-like Gene Family AT5G45370 68.7 2.4e-102 369.0
Cre11g1981 . 12 313 Nodulin-like Gene Family AT1G21890 65.7 1.2e-114 410.2
Cre08g0513 . 26 327 Nodulin-like Gene Family AT1G21890 50.2 1.0e-86 317.4
Cre10g1762 . 15 318 Nodulin-like Gene Family AT1G21890 53.2 2.3e-86 316.2
Cre04g0938 . 11 311 Nodulin-like Gene Family AT1G21890 50.3 8.5e-81 297.7
Cre07g1592 . 1 565 Nodulin-like Gene Family AT1G80530 59.4 2.2e-187 652.5
Cre07g1486 . 4 417 Nodulin-like Gene Family AT4G19450 66.0 9.0e-146 513.8
Cre06g0836 . 44 442 Nodulin-like Gene Family AT4G19450 58.0 3.4e-129 458.8
Cre06g2517 . 7 538 Nodulin-like Gene Family AT1G74780 58.2 1.8e-178 622.9
Cre06g2518 . 6 522 Nodulin-like Gene Family AT1G74780 56.7 1.1e-164 577.0
Cre06g2519 . 13 481 Nodulin-like Gene Family AT1G74780 58.8 1.1e-156 550.4
Cre02g1490 . 9 540 Nodulin-like Gene Family AT4G34950 70.0 2.6e-220 761.9
Cre02g0774 . 10 514 Nodulin-like Gene Family AT4G34950 66.4 2.9e-203 705.3
Cre11g1194 . 6 592 Nodulin-like Gene Family AT5G14120 68.6 1.0e-232 803.1
Cre02g1490 . 1 386 Nodulin-like Gene Family AT2G16660 70.1 3.9e-151 531.6
Cre02g0774 . 5 368 Nodulin-like Gene Family AT2G16660 68.0 9.7e-142 500.4
Cre05g2307 . 15 584 Nodulin-like Gene Family AT2G39210 68.3 2.7e-223 771.9
Cre05g2306 . 1 540 Nodulin-like Gene Family AT2G39210 69.7 8.3e-217 750.4
Cre08g0732 . 28 604 Nodulin-like Gene Family AT2G39210 62.9 1.2e-210 729.9
Cre05g2308 . 3 559 Nodulin-like Gene Family AT2G39210 64.3 1.5e-202 703.0
Cre10g2113 . 1 579 Nodulin-like Gene Family AT2G39210 58.7 4.4e-194 674.9
Cre03g0574 . 19 575 Nodulin-like Gene Family AT2G39210 59.6 8.1e-188 654.1
Cre04g1033 . 18 579 Nodulin-like Gene Family AT2G39210 56.2 1.3e-182 636.7
Cre04g0330 . 12 534 Nodulin-like Gene Family AT2G39210 52.4 1.7e-153 540.0
Cre03g0561 . 16 557 Nodulin-like Gene Family AT2G39210 50.6 5.0e-153 538.5
Cre10g2117 . 1 221 Nodulin-like Gene Family AT2G39210 63.3 2.6e-77 287.0
Cre07g1486 . 7 565 Nodulin-like Gene Family AT3G01630 52.8 2.3e-147 519.6
Cre06g0836 . 50 589 Nodulin-like Gene Family AT3G01630 50.4 4.1e-141 498.8
Cre11g1194 . 6 429 Nodulin-like Gene Family AT3G01930 69.4 5.7e-167 584.3
Cre06g2517 . 10 537 Nodulin-like Gene Family AT1G18940 54.7 1.0e-165 580.5
Cre06g2518 . 3 520 Nodulin-like Gene Family AT1G18940 54.3 8.4e-157 550.8
Cre06g2519 . 7 481 Nodulin-like Gene Family AT1G18940 54.7 1.6e-147 520.0
Cre06g2517 . 6 539 Nodulin-like Gene Family AT2G34350 56.4 1.3e-160 563.5
Cre06g2518 . 8 522 Nodulin-like Gene Family AT2G34350 54.6 6.3e-152 534.6
Cre06g2519 . 11 477 Nodulin-like Gene Family AT2G34350 55.4 4.1e-143 505.4
Cre03g0574 . 15 574 Nodulin-like Gene Family AT2G28120 69.8 3.3e-223 771.5
Cre05g2307 . 17 568 Nodulin-like Gene Family AT2G28120 61.3 3.6e-193 671.8
Cre08g0732 . 24 588 Nodulin-like Gene Family AT2G28120 59.3 3.0e-187 652.1
Cre05g2306 . 10 536 Nodulin-like Gene Family AT2G28120 61.9 1.6e-185 646.4
Cre10g2113 . 19 555 Nodulin-like Gene Family AT2G28120 60.6 7.0e-181 630.9
Cre03g0561 . 13 561 Nodulin-like Gene Family AT2G28120 57.0 2.5e-178 622.5
Cre05g2308 . 9 563 Nodulin-like Gene Family AT2G28120 57.4 8.9e-176 614.0
Cre04g1033 . 16 573 Nodulin-like Gene Family AT2G28120 55.5 9.5e-170 594.0
Cre03g0569 . 8 581 Nodulin-like Gene Family AT2G28120 53.7 1.3e-166 583.6
Cre04g0330 . 1 537 Nodulin-like Gene Family AT2G28120 52.4 5.3e-152 535.0
Cre10g2117 . 1 229 Nodulin-like Gene Family AT2G28120 60.4 3.4e-74 276.6
Cre07g1486 . 4 570 Nodulin-like Gene Family AT1G31470 56.2 2.5e-165 579.3
Cre06g0836 . 50 596 Nodulin-like Gene Family AT1G31470 56.3 2.5e-162 569.3
Cre09g0924 . 27 216 Nodulin-like Gene Family AT1G76800 76.8 1.6e-71 266.2
Cre08g0643 . 17 215 Nodulin-like Gene Family AT1G76800 69.8 5.5e-69 257.7
Cre09g1377 . 8 202 Nodulin-like Gene Family AT1G76800 62.6 2.7e-60 228.8
Cre09g1377 . 9 202 Nodulin-like Gene Family AT3G25190 66.3 3.5e-64 241.9
Cre08g0643 . 23 215 Nodulin-like Gene Family AT3G25190 63.2 8.1e-61 230.7
Cre09g0924 . 34 216 Nodulin-like Gene Family AT3G25190 63.7 6.4e-58 221.1
Cre08g0643 . 20 215 Nodulin-like Gene Family AT1G21140 75.5 6.4e-73 270.8
Cre09g0924 . 29 216 Nodulin-like Gene Family AT1G21140 73.9 5.1e-70 261.2
Cre09g1377 . 7 202 Nodulin-like Gene Family AT1G21140 62.2 5.5e-64 241.1
Cre08g0643 . 20 212 Nodulin-like Gene Family AT3G43630 77.2 3.2e-72 268.5
Cre09g0924 . 29 213 Nodulin-like Gene Family AT3G43630 73.5 7.4e-69 257.3
Cre09g1377 . 7 199 Nodulin-like Gene Family AT3G43630 62.2 9.6e-61 230.3
Cre08g0643 . 20 215 Nodulin-like Gene Family AT3G43660 74.0 7.0e-72 267.3
Cre09g0924 . 25 216 Nodulin-like Gene Family AT3G43660 70.8 3.9e-70 261.5
Cre09g1377 . 7 202 Nodulin-like Gene Family AT3G43660 61.7 6.0e-63 237.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008546 1 3 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 3 1 2 2 2 35