Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0534 ATGGAATTGAAAACAGAAGTAAAGGAAGTTCAACACCATTTCCATGTACTGGCAGTGGATGATAGTCTTATTGATAGAAAGCTTTTGGAAAAGCTCTTAACAATTTCTTCATGTGAAGTTACCTGTGTGGAATCTGGAGATAAAGCTCTTAGATATTTGGGTCTTCTTGATGATCTCGATAAATTCTCTTCTTCTGCTGCTGCTGCTTCCTTTTCTTCCTCACAACTCTCCCAACAACAGGAAGTCAAAGTCAACCTAATCATGACAGATTACTGTATGCCTGGGATGAGTGGTTATGATCTACTCAAACGACTCAAGGGATCTTATTGGAAGGATATTCCTGTTGTTGTGATGTCATCAGAGAACGAACCTTCAAGAATCAACATGTGTTTGGAAGAAGGAGCAGAGGAATTCCTTCTAAAACCTCTTCAACTATCAGATGTCAAGAAGCTCGAGCCTCACCTTCAAAAATCCCTCACCCGTTGTTCTACAGATCAAATCAATGAAGAAGAAATTACCACAGTCGGAATCGGAATCACCGACGAACAGAACTTGAAATTAGAAGAGAGTAAGAAGAATGAGAATAGCATTAATAATAGCTTGAGCAAGAGAAAGGCAGCGAATCCAGAGCATTGTGAAGAAAGACGACCAAAATTGAAAGAATTGGAAGCTGGAGTATGA 681 39.5 MELKTEVKEVQHHFHVLAVDDSLIDRKLLEKLLTISSCEVTCVESGDKALRYLGLLDDLDKFSSSAAAASFSSSQLSQQQEVKVNLIMTDYCMPGMSGYDLLKRLKGSYWKDIPVVVMSSENEPSRINMCLEEGAEEFLLKPLQLSDVKKLEPHLQKSLTRCSTDQINEEEITTVGIGITDEQNLKLEESKKNENSINNSLSKRKAANPEHCEERRPKLKELEAGV 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17995045 17999080 + CrPI670011_08g005340.1 Cre08g0534 505452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0534 226 CDD REC_typeA_ARR 16 151 - -
Cre08g0534 226 Gene3D - 15 224 - -
Cre08g0534 226 SMART REC_2 14 152 IPR001789 GO:0000160(InterPro)
Cre08g0534 226 ProSiteProfiles Response regulatory domain profile. 15 156 IPR001789 GO:0000160(InterPro)
Cre08g0534 226 MobiDBLite consensus disorder prediction 206 226 - -
Cre08g0534 226 PANTHER TWO-COMPONENT RESPONSE REGULATOR 11 205 IPR045279 GO:0009736(InterPro)
Cre08g0534 226 SUPERFAMILY CheY-like 14 150 IPR011006 -
Cre08g0534 226 MobiDBLite consensus disorder prediction 189 226 - -
Cre08g0534 226 Pfam Response regulator receiver domain 66 149 IPR001789 GO:0000160(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g0534 Cre-Chr8:17995045 Cre09g1785 Cre-Chr9:36276213 3.50E-43 dispersed
Cre08g0534 Cre-Chr8:17995045 Cre06g2534 Cre-Chr6:32991425 4.60E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54149 PF00072 Response_reg 1.70E-15 CL0304 Cre TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0534 K14492 - csv:101216267 326.635