Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0536 ATGGCCGAGCCTTTGTCCCTACAACTGACACTTCCATCGCATTCATCCCCCATTGCTGCTGCTTCGAAAAACTCAATTTCAACTAAATCCATGGCTGCTACCGTTTTTGGAACCGCCGCCGCCTCCTCCGCCTCATCAACCACTCGTTTCCTCTCCTCAGCCACCAGAGCTACACTATCTTTCTCTTCACGTTCACCATCGCTTCTCTCTTGCTCTTCGTCCTCCTCTTTCAAGTTCCTCAGATCGTCTCCTCTCATTTCTTACCTTTTTCTGAACCAGGGAAGGCCGAATTCTTGTGTATCGAATAGAGAATTCAGTGCGGCGTCTAATCCGAAATGCCTGGCATCGGACCCTGAGCAGTTGAAGAGTGCTAGAGAAGATATCAAGGAGCTCCTGAAGACCACATTCTGTCATCCTATTTTGGTACGTCTAGGTTGGCATGATGCTGGAACTTACAATAAAAATATTGAGGAATGGCCTCAGAGAGGTGGAGCTAATGGAAGTTTAAGATTTGATGTTGAGCTGGGGCATGGTGCCAATGCTGGTCTTGTTAATGCCTTGAAACTCATTGAGCCTATCAAAAAGAAGTATTCTAACGTGACATATGCGGACCTATTTCAGCTGGCCAGTGCTACAGCTATCGAGGAGGCTGGCGGACCCAAAATCCCCATGAAGTATGGAAGGGTGGATGTTGTTGGGCCGGAGCAATGCCCTGAAGAGGGGAGGCTTCCTGATGCTGGTCCTCCATCACCTGCTGCACATCTACGAGAAGTTTTCTACAGAATGGGGTTGAATGACAAGGAAATAGTTGCATTATCTGGGGCACACACGCTAGGGAGAGCTAGGCCAGAACGCAGTGGTTGGGGCAAGCCAGAGACCAAATATACGAAAGATGGACCTGGTGCACCTGGTGGTCAATCCTGGACCGTGCAATGGTTGAAGTTTGACAACTCATATTTTAAGGATATCAAAGAGAGGGCAGATGAGGAATTACTGGTGTTGCCAACTGACGCAGTTCTCTTTGAAGATCCAGGATTTAAGGTTTATGCTGAAAAATATGTTGAAGATCAAGAAGCATTCTTCAAAGATTATGCTGAAGCCCATGCCAAACTCAGCAACCTTGGTGCTAAATTTGACCCTCCTGAGGGTATTGTGCTTGATGATGCATCTTCGAAACCTGCTGGAGAGAAGTTCGAGGCCGCCAAATACTCATATGGAAAGAGAGAGCTATCAGACTCAATGAAGCAGAAGATTCGGGCTGAATACGAAGGTTTTGGTGGAAGTCCAGATAAGCCTTTACCAACAAACTACTTCCTTAATATCATTGTTGTGATTGCTGTTTTAGCAATTTTGACATCCCTGCTTGGAAACTAA 1374 46.51 MAEPLSLQLTLPSHSSPIAAASKNSISTKSMAATVFGTAAASSASSTTRFLSSATRATLSFSSRSPSLLSCSSSSSFKFLRSSPLISYLFLNQGRPNSCVSNREFSAASNPKCLASDPEQLKSAREDIKELLKTTFCHPILVRLGWHDAGTYNKNIEEWPQRGGANGSLRFDVELGHGANAGLVNALKLIEPIKKKYSNVTYADLFQLASATAIEEAGGPKIPMKYGRVDVVGPEQCPEEGRLPDAGPPSPAAHLREVFYRMGLNDKEIVALSGAHTLGRARPERSGWGKPETKYTKDGPGAPGGQSWTVQWLKFDNSYFKDIKERADEELLVLPTDAVLFEDPGFKVYAEKYVEDQEAFFKDYAEAHAKLSNLGAKFDPPEGIVLDDASSKPAGEKFEAAKYSYGKRELSDSMKQKIRAEYEGFGGSPDKPLPTNYFLNIIVVIAVLAILTSLLGN 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18038352 18044554 - CrPI670011_08g005360.1 Cre08g0536 505454

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0536 457 CDD ascorbate_peroxidase 115 379 - -
Cre08g0536 457 Pfam Peroxidase 125 356 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre08g0536 457 MobiDBLite consensus disorder prediction 281 303 - -
Cre08g0536 457 Gene3D Peroxidase, domain 2 246 369 - -
Cre08g0536 457 FunFam L-ascorbate peroxidase T, chloroplastic 246 369 - -
Cre08g0536 457 FunFam L-ascorbate peroxidase S chloroplastic/mitochondrial 124 248 - -
Cre08g0536 457 PRINTS Haem peroxidase superfamily signature 138 152 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre08g0536 457 PRINTS Haem peroxidase superfamily signature 218 230 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre08g0536 457 PRINTS Haem peroxidase superfamily signature 200 217 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre08g0536 457 PRINTS Haem peroxidase superfamily signature 308 323 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre08g0536 457 PRINTS Haem peroxidase superfamily signature 268 283 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre08g0536 457 ProSitePatterns Peroxidases proximal heme-ligand signature. 268 278 IPR019793 -
Cre08g0536 457 Gene3D - 124 377 - -
Cre08g0536 457 PRINTS Plant ascorbate peroxidase signature 138 153 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre08g0536 457 PRINTS Plant ascorbate peroxidase signature 218 230 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre08g0536 457 PRINTS Plant ascorbate peroxidase signature 337 361 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre08g0536 457 PRINTS Plant ascorbate peroxidase signature 199 217 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre08g0536 457 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 52 383 IPR044831 GO:0000302(PANTHER)|GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0034599(InterPro)|GO:0034599(PANTHER)|GO:0042744(PANTHER)
Cre08g0536 457 ProSiteProfiles Plant heme peroxidase family profile. 141 396 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre08g0536 457 SUPERFAMILY Heme-dependent peroxidases 118 377 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0536 K00434 - - csv:101216755 791.186
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g0536 Cre-Chr8:18038352 Cre03g0516 Cre-Chr3:3701048 4.30E-56 dispersed
Cre08g0536 Cre-Chr8:18038352 Cre04g1662 Cre-Chr4:34969056 4.90E-60 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g248 . . . . . . . . Cmo04g02484 Cmo15g00678 . . . . Sed01g3111 . . Bhi04g01899 Tan11g1263 Cmetu03g1741 . Hepe02g2244 . . Cla08g00603 Cam08g1017 Cec08g0607 Cco08g0718 Clacu08g0728 . Cre08g0536 . Cone7ag1522 Cone17ag1289 Cone20ag0439 . . . Cme03g00534 Blo17g00174 . . Bda13g01479 Bpe02g01647 Bpe14g00386 Bma01g00808 Bma02g00215 . . . . . Car04g02298 Car15g00616 Cpe01g02059 . . . . . . . . . . . . . . . Lsi08g00443 . Chy03g00786 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003748 3 2 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 4 1 1 46