Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0540 ATGTCGGAAGTAATTGCCGTAATGGATATCGACGACGATAATGGGAACAACGAAGCTGAAAAGCCAGTCAAGGGCAAAAACGTTGCCAGTCCTGCCGCCGCACCCGACGGCAAAGCGATACCCTGGGTCGAGAAGTTCCGGCCTAAGTCTCTTGCTGATGTTGCTGCTCACCGCGACATTGTTGACACCATCGACAAGCTGACCAGTGAGAATAGGCTGCCACATCTCCTGTTGTACGGCCCTCCTGGCACTGGCAAGACATCAACTATTCTAGCGGTTGCTCGCAAGCTTTATGGAACAAACTACCATAATATGATTCTGGAGCTGAACGCATCAGATGATAGAGGGATAGATGTTGTCAGACAGCAGATTCAGGATTTTGCAAGTACCCAAAGCTTCTCATTTGGGGCAAAGGCATCTGTAAAATTGGTTTTATTGGACGAGGCAGATGCCATGACTAAAGATGCACAGTTTGCTTTACGTAGAGTAATTGAGAAATACACAAAAAATACAAGGTTTGCTCTTATTTGCAATCACGTCAATAAGATTATTCCAGCATTACAATCAAGGTGTACCCGCTTTCGATTTGCTCCCCTTGATAACTTTCATGTCACTGAGCGGCTCAGATATGTTATTGAGGCTGAGAGGTTGGATGTCACTGAGAGTGGCTTAACTGCCCTTGTTCGACTTTGCAGTGGTGATATGAGAAAGGCTTTAAATATTCTGCAGTCAACGCATATGGCTTCTCAGCATATTACTGAAGAAGCTGTATACCTTTGCACAGGAAATCCAATGCCTAAAGACATAGAGCAAATATCATTTTGGCTGCTGAATGAACCATTTTCTGACAGTTTTAAGCGAATATCTGAAATAAAGACCAGAAAAGGATTGGCTTTGGTTGATATAGTGAGAGAAGTCACTCTGTTCGTTTTTAAGATAAAGATGCCATCGGATATCAGAGTCCAGTTGATTAATGATCTAGCTGACATAGAGTACCGGATGAGTTTCGGATGCAATGACAAGTTACAACTCGGATCGCTCATCTCATCTTTTACACGAGCTAGATCTGCACTCGTCGCTGCTGCACAGTAG 1092 43.96 MSEVIAVMDIDDDNGNNEAEKPVKGKNVASPAAAPDGKAIPWVEKFRPKSLADVAAHRDIVDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERLDVTESGLTALVRLCSGDMRKALNILQSTHMASQHITEEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALVDIVREVTLFVFKIKMPSDIRVQLINDLADIEYRMSFGCNDKLQLGSLISSFTRARSALVAAAQ 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18078296 18083910 + CrPI670011_08g005400.1 Cre08g0540 505458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0540 363 CDD AAA 60 198 - -
Cre08g0540 363 MobiDBLite consensus disorder prediction 9 34 - -
Cre08g0540 363 Pfam ATPase family associated with various cellular activities (AAA) 76 198 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cre08g0540 363 FunFam Replication factor C subunit 5 34 199 - -
Cre08g0540 363 Gene3D - 36 198 IPR027417 -
Cre08g0540 363 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 41 355 IPR050238 GO:0003689(PANTHER)|GO:0005634(PANTHER)|GO:0005663(PANTHER)|GO:0006261(PANTHER)|GO:0006281(PANTHER)
Cre08g0540 363 Gene3D - 264 361 - -
Cre08g0540 363 FunFam Replication factor C subunit 5 264 361 - -
Cre08g0540 363 SMART AAA_5 72 202 IPR003593 GO:0016887(InterPro)
Cre08g0540 363 SUPERFAMILY post-AAA+ oligomerization domain-like 264 354 IPR008921 GO:0003677(InterPro)|GO:0006260(InterPro)
Cre08g0540 363 FunFam Replication factor C subunit 5 201 263 - -
Cre08g0540 363 CDD HLD_clamp_RFC 203 261 IPR047854 -
Cre08g0540 363 Pfam Replication factor C C-terminal domain 264 349 IPR013748 -
Cre08g0540 363 Gene3D - 202 263 - -
Cre08g0540 363 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 257 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g1463 Cre-Chr7:29755861 Cre08g0540 Cre-Chr8:18078296 1.60E-09 dispersed
Cre08g0540 Cre-Chr8:18078296 Cre10g0592 Cre-Chr10:5420495 1.60E-53 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0540 K10756 - csv:101217230 692.96