Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0548 ATGTCTGCCCATAATCGCCGCCCTTCGTTTTCGTCGTCGACATCCTCCTCGTTGGCCAAACGACAAGCGTCCTCGGCCTCGTCGTCAGACAATGTCGGAAAAGTTATGGCAGTTCCGCCACATTTGGCGAAGAAGCGAGCACCACTCGGTAACCTAACGAATTTTAAGAATGTGTCTCATAGCGCAGCCAAAAGCTCTGTTCCTCCTGCTATTGTGGTGCCTTGTGCAACCAAAGCTGTCAAGGCTAGAAAGAGTTCCCCTGCTAGAACTCGCAGCACTAACTTGACGGCGACTAATACAACCACATTGCTCGATGTCAAAACTACGAATGCAATTGCTCCTAGCAATGTTACAGCTTTCTCAAGAACTGATGCAACCGCTGTCTCTAGTTCTATGGATGTCTCTCCCTCTAAATCAGATGGAGTTTCAGTTTCCTTAGATGAAACTATGTCTACTTGCGATTCGTTTAAGAGTCCGGACGTCGAGTACTTGGACAATACTGATGTCCCAGCAGTTGATTCTGTTGAGAGGAAAACTAAAAGCAGTCTCTGCATTTCAGGTCCTGCACCAATTAGTAGTCAGGCACCAGTTAAAGGTAGTATATGCAATAGAGATGTAATTACAGAAATGGAAACAGATGGCGACATCGTTGATGTTGACACGGATTTCATGGATCCCCAGCAATGTGCTACAATTGCTTGTGACATTTACAAGCACTTACGAGCATCTGAGGCAAAGAAAAGGCCTTCAACAGATTTCATGGAGAAAATTCAGAAGGATATAAATTCAAATATGCGTGCCATACTGATCGATTGGCTTGTGGAGGTAGCAGAAGAGTATAGGCTTGTTCCAGATACTCTATATTTGACAGTAAACTACATTGATCGATACCTATCTGGAAATTCGATGGATCGACAACGATTACAATTGCTTGGTGTTGCTTGCATGATGATTGCCTCGAAATATGAAGAGATCTGTGCGCCTCAAGTGGAAGAATTTTGTTACATAACTGATAACACATATTTTAAAGACGAGGTATTGGAAATGGAATCTTCTGTCTTGAATTACTTGAAGTTCGAAATGACGGCCCCTACACCTAAATGTTTCTTAAGGCGATTTGTTCGTGCTGCTCAAGGCGCCACCGATGAGGTTTCATCAATGCAGTTGGAATGCTTGGCCAACTTCCTTGCTGAATTATCTCTTATAGAATACAGTATGCTCTGCTACGCACCATCGCTCGTAGCTGCCTCGGCGATCTTCTTGGCGAAGTTCATACTTCTTCCAACTAAGAGACCATGGAACTCCACCTTGCAACATTATACGCATTATCAGCCATCCGACCTTGTCGACTGCGTTAAGGATTTGCATCGCCTCTGCTGCAACACCCAAAATTCTAGCTTACCAGCCATCAGAGAGAAATACAGCCAGCATAAGTACAAGCACGTGGCCAAGAAGTACTGCCCTCCGACGATACCGCCGGAGTTCTTCCAGAATCAAACACAGTAA 1506 44.62 MSAHNRRPSFSSSTSSSLAKRQASSASSSDNVGKVMAVPPHLAKKRAPLGNLTNFKNVSHSAAKSSVPPAIVVPCATKAVKARKSSPARTRSTNLTATNTTTLLDVKTTNAIAPSNVTAFSRTDATAVSSSMDVSPSKSDGVSVSLDETMSTCDSFKSPDVEYLDNTDVPAVDSVERKTKSSLCISGPAPISSQAPVKGSICNRDVITEMETDGDIVDVDTDFMDPQQCATIACDIYKHLRASEAKKRPSTDFMEKIQKDINSNMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNSMDRQRLQLLGVACMMIASKYEEICAPQVEEFCYITDNTYFKDEVLEMESSVLNYLKFEMTAPTPKCFLRRFVRAAQGATDEVSSMQLECLANFLAELSLIEYSMLCYAPSLVAASAIFLAKFILLPTKRPWNSTLQHYTHYQPSDLVDCVKDLHRLCCNTQNSSLPAIREKYSQHKYKHVAKKYCPPTIPPEFFQNQTQ 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18186605 18189614 + CrPI670011_08g005480.1 Cre08g0548 505466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0548 501 SMART Cyclin_C_2 364 488 IPR004367 -
Cre08g0548 501 SMART cyclin_7 271 355 IPR013763 -
Cre08g0548 501 SMART cyclin_7 368 457 IPR013763 -
Cre08g0548 501 Pfam Cyclin, N-terminal domain 235 362 IPR006671 -
Cre08g0548 501 ProSitePatterns Cyclins signature. 266 297 IPR048258 -
Cre08g0548 501 MobiDBLite consensus disorder prediction 1 34 - -
Cre08g0548 501 CDD CYCLIN_AtCycA-like_rpt2 364 479 - -
Cre08g0548 501 SUPERFAMILY Cyclin-like 225 361 IPR036915 -
Cre08g0548 501 CDD CYCLIN_AtCycA_like_rpt1 225 360 - -
Cre08g0548 501 Gene3D - 235 484 - -
Cre08g0548 501 FunFam Mitotic cyclin 6 249 349 - -
Cre08g0548 501 SUPERFAMILY Cyclin-like 364 491 IPR036915 -
Cre08g0548 501 PIRSF Cyclin_A_B_D_E 4 495 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Cre08g0548 501 Gene3D - 249 362 - -
Cre08g0548 501 MobiDBLite consensus disorder prediction 1 32 - -
Cre08g0548 501 Pfam Cyclin, C-terminal domain 364 485 IPR004367 -
Cre08g0548 501 PANTHER CYCLINS 215 476 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cre08g0548 501 FunFam Cyclin A1 351 484 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g0930 Cre-Chr7:9001597 Cre08g0548 Cre-Chr8:18186605 7.40E-16 dispersed
Cre08g0548 Cre-Chr8:18186605 Cre08g1567 Cre-Chr8:28289464 1.50E-78 dispersed
Cre08g0548 Cre-Chr8:18186605 Cre09g0228 Cre-Chr9:2391492 2.00E-83 transposed
Cre08g0548 Cre-Chr8:18186605 Cre05g2222 Cre-Chr5:33883535 2.00E-83 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0548 K06627 - csv:101221569 899.042