Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre08g0548 | ATGTCTGCCCATAATCGCCGCCCTTCGTTTTCGTCGTCGACATCCTCCTCGTTGGCCAAACGACAAGCGTCCTCGGCCTCGTCGTCAGACAATGTCGGAAAAGTTATGGCAGTTCCGCCACATTTGGCGAAGAAGCGAGCACCACTCGGTAACCTAACGAATTTTAAGAATGTGTCTCATAGCGCAGCCAAAAGCTCTGTTCCTCCTGCTATTGTGGTGCCTTGTGCAACCAAAGCTGTCAAGGCTAGAAAGAGTTCCCCTGCTAGAACTCGCAGCACTAACTTGACGGCGACTAATACAACCACATTGCTCGATGTCAAAACTACGAATGCAATTGCTCCTAGCAATGTTACAGCTTTCTCAAGAACTGATGCAACCGCTGTCTCTAGTTCTATGGATGTCTCTCCCTCTAAATCAGATGGAGTTTCAGTTTCCTTAGATGAAACTATGTCTACTTGCGATTCGTTTAAGAGTCCGGACGTCGAGTACTTGGACAATACTGATGTCCCAGCAGTTGATTCTGTTGAGAGGAAAACTAAAAGCAGTCTCTGCATTTCAGGTCCTGCACCAATTAGTAGTCAGGCACCAGTTAAAGGTAGTATATGCAATAGAGATGTAATTACAGAAATGGAAACAGATGGCGACATCGTTGATGTTGACACGGATTTCATGGATCCCCAGCAATGTGCTACAATTGCTTGTGACATTTACAAGCACTTACGAGCATCTGAGGCAAAGAAAAGGCCTTCAACAGATTTCATGGAGAAAATTCAGAAGGATATAAATTCAAATATGCGTGCCATACTGATCGATTGGCTTGTGGAGGTAGCAGAAGAGTATAGGCTTGTTCCAGATACTCTATATTTGACAGTAAACTACATTGATCGATACCTATCTGGAAATTCGATGGATCGACAACGATTACAATTGCTTGGTGTTGCTTGCATGATGATTGCCTCGAAATATGAAGAGATCTGTGCGCCTCAAGTGGAAGAATTTTGTTACATAACTGATAACACATATTTTAAAGACGAGGTATTGGAAATGGAATCTTCTGTCTTGAATTACTTGAAGTTCGAAATGACGGCCCCTACACCTAAATGTTTCTTAAGGCGATTTGTTCGTGCTGCTCAAGGCGCCACCGATGAGGTTTCATCAATGCAGTTGGAATGCTTGGCCAACTTCCTTGCTGAATTATCTCTTATAGAATACAGTATGCTCTGCTACGCACCATCGCTCGTAGCTGCCTCGGCGATCTTCTTGGCGAAGTTCATACTTCTTCCAACTAAGAGACCATGGAACTCCACCTTGCAACATTATACGCATTATCAGCCATCCGACCTTGTCGACTGCGTTAAGGATTTGCATCGCCTCTGCTGCAACACCCAAAATTCTAGCTTACCAGCCATCAGAGAGAAATACAGCCAGCATAAGTACAAGCACGTGGCCAAGAAGTACTGCCCTCCGACGATACCGCCGGAGTTCTTCCAGAATCAAACACAGTAA | 1506 | 44.62 | MSAHNRRPSFSSSTSSSLAKRQASSASSSDNVGKVMAVPPHLAKKRAPLGNLTNFKNVSHSAAKSSVPPAIVVPCATKAVKARKSSPARTRSTNLTATNTTTLLDVKTTNAIAPSNVTAFSRTDATAVSSSMDVSPSKSDGVSVSLDETMSTCDSFKSPDVEYLDNTDVPAVDSVERKTKSSLCISGPAPISSQAPVKGSICNRDVITEMETDGDIVDVDTDFMDPQQCATIACDIYKHLRASEAKKRPSTDFMEKIQKDINSNMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNSMDRQRLQLLGVACMMIASKYEEICAPQVEEFCYITDNTYFKDEVLEMESSVLNYLKFEMTAPTPKCFLRRFVRAAQGATDEVSSMQLECLANFLAELSLIEYSMLCYAPSLVAASAIFLAKFILLPTKRPWNSTLQHYTHYQPSDLVDCVKDLHRLCCNTQNSSLPAIREKYSQHKYKHVAKKYCPPTIPPEFFQNQTQ | 501 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 18186605 | 18189614 | + | CrPI670011_08g005480.1 | Cre08g0548 | 505466 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre08g0548 | 501 | SMART | Cyclin_C_2 | 364 | 488 | IPR004367 | - | |
Cre08g0548 | 501 | SMART | cyclin_7 | 271 | 355 | IPR013763 | - | |
Cre08g0548 | 501 | SMART | cyclin_7 | 368 | 457 | IPR013763 | - | |
Cre08g0548 | 501 | Pfam | Cyclin, N-terminal domain | 235 | 362 | IPR006671 | - | |
Cre08g0548 | 501 | ProSitePatterns | Cyclins signature. | 266 | 297 | IPR048258 | - | |
Cre08g0548 | 501 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - | |
Cre08g0548 | 501 | CDD | CYCLIN_AtCycA-like_rpt2 | 364 | 479 | - | - | |
Cre08g0548 | 501 | SUPERFAMILY | Cyclin-like | 225 | 361 | IPR036915 | - | |
Cre08g0548 | 501 | CDD | CYCLIN_AtCycA_like_rpt1 | 225 | 360 | - | - | |
Cre08g0548 | 501 | Gene3D | - | 235 | 484 | - | - | |
Cre08g0548 | 501 | FunFam | Mitotic cyclin 6 | 249 | 349 | - | - | |
Cre08g0548 | 501 | SUPERFAMILY | Cyclin-like | 364 | 491 | IPR036915 | - | |
Cre08g0548 | 501 | PIRSF | Cyclin_A_B_D_E | 4 | 495 | IPR046965 | GO:0016538(InterPro)|GO:0044772(InterPro) | |
Cre08g0548 | 501 | Gene3D | - | 249 | 362 | - | - | |
Cre08g0548 | 501 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Cre08g0548 | 501 | Pfam | Cyclin, C-terminal domain | 364 | 485 | IPR004367 | - | |
Cre08g0548 | 501 | PANTHER | CYCLINS | 215 | 476 | IPR039361 | GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER) | |
Cre08g0548 | 501 | FunFam | Cyclin A1 | 351 | 484 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre07g0930 | Cre-Chr7:9001597 | Cre08g0548 | Cre-Chr8:18186605 | 7.40E-16 | dispersed | |
Cre08g0548 | Cre-Chr8:18186605 | Cre08g1567 | Cre-Chr8:28289464 | 1.50E-78 | dispersed | |
Cre08g0548 | Cre-Chr8:18186605 | Cre09g0228 | Cre-Chr9:2391492 | 2.00E-83 | transposed | |
Cre08g0548 | Cre-Chr8:18186605 | Cre05g2222 | Cre-Chr5:33883535 | 2.00E-83 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre08g0548 | K06627 | - | csv:101221569 | 899.042 |