Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0560 ATGGGTTCATGTGATGACCCGGCTGTGATCGGGGAACCGTTTTGCGGCTCTGTTACTCGGCTGGTCGGGTGTTCGAGTCAACCTCTCTCCAAGCATCAGTCACGCCAGGAGATGGCTTCCTTTCCATCTAATTCTAGTGACGGTCAGATGTTTGAGCCAGATAGGGGACTGGGAGTGACTACGACTGATGTCTGCACCAATGCATCGGAGCCTGATACTGCAGGGGAGGAAGGGACATGTAGAGGCTTCGAACATGCAGATGCTTTGCTAATGGATAAAAGTTTGGATAGTGATCCCTGTTTAAACGAGGATAACGAGGCTTGCAACGTGCGGGATAGAACATTGAGCTTGGATATGAAAGAGTCTCAAGACGTTGATGGTTTGGTTGATATTTTGGGCTGCAAAACTACCATGGAAATGATGTCTTTAACCGGGTCATTAGTAGATTCTGTTAAACCCGAAGAACTTGATAATAATAGTTGTATAATTGATGCTTCTGCAAAAGTCGAAAGAGACGATACTGTAGAAAATGGTCCTATTTTAGCACGGACGGGTACTTGTACAGATGACTTTAAATCTCCTTATGTCTGTGAAATTGTTTCTAATTCAGCCTCTGCCGATGGGCTGGCATGTGATTTCATACAACACAACGAGCTGCAAAATGATGGTGCTGGTTGTTCATTTTCAGAGGTTGCAGACAGGATAACTGAGGCTTCGGTTGAAATAGAAGCAGATATGTTGAATGAGATGTCACCTTTACAGAGTGGTCAAATACTACCAATACACGTGGAACAATCAGTTGCCAATTGTGATCGGCATGTTTGCCAGATGGATGGGAAGAGCCTAAGTGGTACCACTGGAGAAACAGTTAAAGAAGTTGCTGATATGGACAGCAATCCTGAAGTGTGCTTGCAAATGTTGTCTTCACAAGGATGCCAGAGGATTGGGGAATGCTTGCAATCTGATGGTTCACCACTAACCATCCATGCTCCAGAGAATGATTGGCGTGATGAAAAACTTGACAGTAATTCATCCAAGTACAATCCAGAGGTCGTGGAAGACGATATTGATGTCTTGACTAATAATAATAGTGATGGTGGACAACATATAGTTCCCGGGATTGAAAGTGACCGCAATCTGGAGGAAGCTACTATTCAAGTGAACCACAACTGTGTTGAACTACTTGCATCACCCTTGCCTTCTCAGCCCCCTAATTCTGAAAAGGATGAATTTTATGGGATGTTGAATGGAGCAGATATTCCAATAAAGGATATTAGTTCTGTTAATTCATGTAGTGTCGGTGATCAAGACAACAATGACATAGAGAAAGTTGGCTGTGTTTCTGAAGTTAAATGTCCTGAAACAGTTATCATGTCTTCTAAGAGGAGTGGCCGAAGGAGAACGTCAAGCCAAAAAGCTGTGACAAAAAGGGCATCCAGGAAGAGCAAAAAAAAGGTGCCAGAGCCACTGATTTTTGACACTGCAAGAAGGAGGAGAAGCTTTATATCTAGGCCTGCTCGTCCCTCACCCTGGGGATCACTGGGCTATATTATTCAGTCATTTGAAGAAATTGATGATGTTGTGGTAAATCAAAGCCAGAAGCAAGGAAATGAGAAATCTAAAGGTAATCAAAGAGGTACCAAGAGGAATAAGAAACAGCCAAGTGAAAGTTCACATAGATCAAGAAAAGGGACCCAAGGAAAATGTGCTACTTCCACTTCAACCAACCGTATTCGTCTGAAGGTTAAATTAGGGAAGAATGTGGGCCATAATTTTCTGAACATTGTGGTTCCCGATATTGTGGATTCATCATTGTCTGCAAAGGGTGTCAATTGCAATTATGGTAATGAATCATATTGGGAAGGCAATTTGGAATTTCCACCATCAACCCTTGGTGTTGATGAACAAAAGCCCGAAGAGGGGCCTTTAAGAAAGATCTTCTGCTACAGCAGGAATCAGGATAAAGAAGAGAAATGTCCTGATGCTGATGCTGATGCTTCTGTTGTGAATGAACATTGTGCTAATAATGACTCAAGTTGCACCATTATTATGGACAAGCCATCTGCAAAACTTGCAGATGATAATCTTTGTGTTTCCTCCCATTTGGTTGAACCTGTAGAAAGGGCAAGTGATGCCAGGAATTCGGATCCTGGAACTTCACCTGATTCAGAAGTGATAAATTCAATTTTAGATATTCAAGTTGGAGCAATACGTCAGGAAATTTTGCAGGACTCAGTTTTGGCATCTTTAGAAGATTTTTCTGCTTCTGAAAATGCTGCCAGTAGTAAGAAAGGAAGGAAGAAGGAGAAGTCCTGTCGGGCAGTTAATTGTTCTGAGGAAGGTGGCACAGGTGCTTCTGCTTGCAGTAACAGGTCCAAGTCATCAAAGAAGCATGGAAGAAGACAGAACGTGGACAATCAACTTGGTTCTGAGATTGAACTTCCAGAAGAGGCTTTGAAAGCAGACGACATTCTCAAAGATAAAGAATGTTGCAGAACAAATGTTGGCAGTGTGTTTCCTGAATCAGAGAATTCAAAAACATTTCTTCCTTCTCAATCTGCAAAGAAGAAACATTCTAAAGGTTCCAAATCTATTAAAACAAGCAAAGGGAAGGTGAAGGCTCCTGGCTCAAAAAACAAAACAAAGAATGCTTCAAATGAGAGGGTTTACCAACGGAAGTCTTTAAATAAGAGTAAAATTAAGGAGGCTCTATGTGACCGAGTTGTGACTGAAACGGAAAGTCACCAAATAGTAGGAAATTGCGTTGTAGACAAGCCTGTTAAAATCGATGACATCATTGCATCCACAGTGGCAGTAAATTTGAGTGTGGTACAGGGTGCTGTGAATGAGCAGTATATGCCTCCTCGCAATGCTTGGGTGCTCTGTGATGATTGTCATAAATGGCGACGCATACCGGCTTCTCTTGTTGATAGTTTAGGACATGCAAGTTGCACATGGACTTGTAAGGACAATGTGGATAAAGCTTTTGCTAATTGTTCAATCCCACAAGAAAAGTCAAATGCAGAGATTAATGCAGAGTTGGAAATATCAGATGAATCTGGGGAAGAAAATGCTTCCAATAAACGGCTAACTTACAGGGAGTTGGAGAGTTTCCATCCAACAACAGTGACTGCTGTTCCTCAAGAGAACAAATTTGCTTCCATTAGCAGCAATCAGTTTTTGCACCGCAGCCGTAAAACTCAGACTATTGATGAGATAATGGTTTGTCATTGCAAACCACCTTTGGATGGTCGGTTAGGCTGTGGAGACGAATGCTTGAACCGAATGCTCAATATTGAATGTGTTCGAGGTACATGTCCATGTGGGGACCTCTGTTCTAATCAACAGTTCCAGAAGCGCAAGTATGCTAAATTACAGTGGTTGCGATGTGGAAAGAAAGGTTATGGGCTACAGTTGCTTGAGGATATATCAAAAGGACAATTTCTCATTGAGTATGTTGGAGAGGTCCTTGACATGCATGCTTATGAGGCACGCCAAAAGGAATATGCATTGAATGGTCATCGGCATTTTTACTTCATGACACTAAATGGCAGTGAGGTCATAGATGCATGTGGAAAGGGAAATTTGGGGCGTTTTATTAACCACAGTTGTGATCCAAATTGCCGCACGGAGAAGTGGATGGTGAATGGAGAAATCTGCATTGGGCTCTTTGCACTAAGGGATATTAAGAAGGGGGAAGAGGTGACATTTGACTACAATTATGTAAGGGTATTTGGGGCTGCTGCAAAAAAATGTTATTGTGGTTCTTTCCAATGTCGAGGTTATATAGGTGGAGACCCCCTCAATTCTGAGGTCATTATTCAAAGTGATTCAGATGAAGAATTCCCAGAACCAGTGATGCTTCGTGCAGATGGTAGAAGTTGGAATAATAACTTGCCAACTGCAGTTAGTTCGTTGGATGTTGCTAAAATGCAACCCTCAGAGCATATAAAAGGGATTAGGGATAAGAGAGATCAACCTATCAGAATTGCTACTGAACCGAAGATTTCAGAAGAAAAGGTGGATACTCTTAAGCTTTCTGCCTCGCAGATTTCAGAAGAAAGAGAGGATCCTCTTGATATTTCTGCATCGAAGATTGCAGAAGAAAAAGAAGATCCTCTTAACCTTTCTGCCTCTACCATTTCACCATTGCACAGTTCATTGGAATTCGAAGACTCAAAGGTAGCATCACCTACTCCACTGCTGGATATTACCCATCAGACTGAAGATGTGACGAGCAAACCTGTCTTTGTTGATCAGACAGAAATTTCTCTTGTGGACAATATTCCTGACAAAAATACATGCTCTATTGAGCAGGAGGCAAAGTTATCAGTTGATGACATTGATGCTCCTAAGAAGTCCAAGCTGGATGCTGTTGAAGATAAGGAAGTGTATATAAAATCGCATCCTCGGATGAAAACTTCACGTAAACCAGGTTCCATCAAGAAAGGAAAAGTTAGCTCGGTTGAAAAAATTCAAATAACTAACAGGTCCCAGATTTCCTCTGTGAAGCCCAAGCGATTGATTGAAGGCTCTCCGGGTAACCGTTTTGAAGCAGTTGAGGAGAAGCTTAATGAACTTCTGGATGCTGAAGGGGGAATTAGCAAAAGAAAAGACGCCCCTAAAGGGTACTTAAAGCTTCTTCTTCTGACTGCTGCATCGGGTGCAAGTGCTAGTGGTGAAGCAATTCAGAGCAATCGAGATCTTTCAATGATCCTTGATGCTCTTTTGAAGACAAAGTCACGAGTAGTATTGACTGACATAATAAACAAAAATGGTTTGCGGATGCTGCATAACATATTGAAGCAATATAGAAGTGACTTCAAAAAGATACCTATTCTTCGGAAGCTTTTGAAGGTCCTAGAATACTTGGTGACGAGAGAGATACTCACCTCAGAGCATATTAATGGAGGTCCTCCTTGCCCTGGAATGGAAAGTTTGAGGGAGTCTTTACTGTCACTGACAGAGCATGATGACAAACAGGTACATCAAATTGCACGAAGTTTTCGGGACAGATGGTTCCCCAGACATACTAGAAAATTTGGTTACTCTGAGAGGGAGGATGGAAGATTGGAAGGTTACAGGGGTTCCAACTGCAGTAGGTTTACAGCATCACACAGTTATCGGCATGATCAGGATTCCAGACCCACGGATGCAATTGATTGTGTCAAGCAGTCGATGCCTACATCTTTGCCAGATGCTCACCCTGCAGAGGTCTGTTCTGTGGCTTCCACAGCTGGTCACTCATTGAATGGACAAAAAGTCCGTAAGCGTAAGAGCCGATGGGATCAGCCTGCAGACACAAGCCTAGATCTGAGATCCAAGGAGCAGAAGCTTGAATCAGCATCGGTGCAGCAATTATATTCCAGCCAATTAAATAGTGCTGGAGTGGCGTCAATGTTGATAGACAAACTAAACAATGATGATAAGGACGTCTCCCTCTCTGATTCTGTTGGAGTACGTTGTCGGCATGATGAAGATATTAGGGCAGACAGTGCAGTGCAGAACATCCCTGAAGATATTCCTCCTGGATTTTCATCTCCCTTCAATCCCCACGTGGCTTCCTCAAGTGCTTTTTCAACAGCTTTAGATCCTCAACAGAATATTAGCGATTTGAGTTGTGCTTTTTCCACGGTTGGGCACCCACAGGAAAGATTTATTTCTCGCATGCCTGTGTCCTATGGAATTCCATTTTCTATCATTGAGCAATGTGGAACATCCCGTACAGAGAATCTGGAGTGTTGGGATGTTGCTCCTGGAGTGCCTTTTCATCCTTTTCCACCCCTGCCACCATATCCTCGAGGTAAGAGAGGCCCGCCTACATCTGCCTCTGGTAGTACAGTTGGACAGTCCTCTCAAGAAGGGCAGGTCAACAGCCATGATTCTCGAGCTTCTTTCTCAGAAGAAAGCCCTCCTAGTACAAGTACTAATTACCAACCAGATTTGTGCACTCCATCAAACAACCAACAGATAATACCGAAACGGGCAAAAGAATTGTCTTATGACTTGGGAAGAAGGTACTTTAGGCAGCAAAAGTGGCGTAATACAAAGTATGGCCCACCTTGGTTACAGAGAAGAAATCAGTGGGGATGCCAGGGAAACTTCAGGGGTGGGGTGAGCACTATAGGTGATGACAATATATCCAATGAAGAAATAAGTCCATATTGCTCGGATGAAGCAAGTGGTAGAGTGGACAAAGCTAATGATGATTATTATCAGCATTTGCAGAATCAAAATCTGCATTGA 6246 42.67 MGSCDDPAVIGEPFCGSVTRLVGCSSQPLSKHQSRQEMASFPSNSSDGQMFEPDRGLGVTTTDVCTNASEPDTAGEEGTCRGFEHADALLMDKSLDSDPCLNEDNEACNVRDRTLSLDMKESQDVDGLVDILGCKTTMEMMSLTGSLVDSVKPEELDNNSCIIDASAKVERDDTVENGPILARTGTCTDDFKSPYVCEIVSNSASADGLACDFIQHNELQNDGAGCSFSEVADRITEASVEIEADMLNEMSPLQSGQILPIHVEQSVANCDRHVCQMDGKSLSGTTGETVKEVADMDSNPEVCLQMLSSQGCQRIGECLQSDGSPLTIHAPENDWRDEKLDSNSSKYNPEVVEDDIDVLTNNNSDGGQHIVPGIESDRNLEEATIQVNHNCVELLASPLPSQPPNSEKDEFYGMLNGADIPIKDISSVNSCSVGDQDNNDIEKVGCVSEVKCPETVIMSSKRSGRRRTSSQKAVTKRASRKSKKKVPEPLIFDTARRRRSFISRPARPSPWGSLGYIIQSFEEIDDVVVNQSQKQGNEKSKGNQRGTKRNKKQPSESSHRSRKGTQGKCATSTSTNRIRLKVKLGKNVGHNFLNIVVPDIVDSSLSAKGVNCNYGNESYWEGNLEFPPSTLGVDEQKPEEGPLRKIFCYSRNQDKEEKCPDADADASVVNEHCANNDSSCTIIMDKPSAKLADDNLCVSSHLVEPVERASDARNSDPGTSPDSEVINSILDIQVGAIRQEILQDSVLASLEDFSASENAASSKKGRKKEKSCRAVNCSEEGGTGASACSNRSKSSKKHGRRQNVDNQLGSEIELPEEALKADDILKDKECCRTNVGSVFPESENSKTFLPSQSAKKKHSKGSKSIKTSKGKVKAPGSKNKTKNASNERVYQRKSLNKSKIKEALCDRVVTETESHQIVGNCVVDKPVKIDDIIASTVAVNLSVVQGAVNEQYMPPRNAWVLCDDCHKWRRIPASLVDSLGHASCTWTCKDNVDKAFANCSIPQEKSNAEINAELEISDESGEENASNKRLTYRELESFHPTTVTAVPQENKFASISSNQFLHRSRKTQTIDEIMVCHCKPPLDGRLGCGDECLNRMLNIECVRGTCPCGDLCSNQQFQKRKYAKLQWLRCGKKGYGLQLLEDISKGQFLIEYVGEVLDMHAYEARQKEYALNGHRHFYFMTLNGSEVIDACGKGNLGRFINHSCDPNCRTEKWMVNGEICIGLFALRDIKKGEEVTFDYNYVRVFGAAAKKCYCGSFQCRGYIGGDPLNSEVIIQSDSDEEFPEPVMLRADGRSWNNNLPTAVSSLDVAKMQPSEHIKGIRDKRDQPIRIATEPKISEEKVDTLKLSASQISEEREDPLDISASKIAEEKEDPLNLSASTISPLHSSLEFEDSKVASPTPLLDITHQTEDVTSKPVFVDQTEISLVDNIPDKNTCSIEQEAKLSVDDIDAPKKSKLDAVEDKEVYIKSHPRMKTSRKPGSIKKGKVSSVEKIQITNRSQISSVKPKRLIEGSPGNRFEAVEEKLNELLDAEGGISKRKDAPKGYLKLLLLTAASGASASGEAIQSNRDLSMILDALLKTKSRVVLTDIINKNGLRMLHNILKQYRSDFKKIPILRKLLKVLEYLVTREILTSEHINGGPPCPGMESLRESLLSLTEHDDKQVHQIARSFRDRWFPRHTRKFGYSEREDGRLEGYRGSNCSRFTASHSYRHDQDSRPTDAIDCVKQSMPTSLPDAHPAEVCSVASTAGHSLNGQKVRKRKSRWDQPADTSLDLRSKEQKLESASVQQLYSSQLNSAGVASMLIDKLNNDDKDVSLSDSVGVRCRHDEDIRADSAVQNIPEDIPPGFSSPFNPHVASSSAFSTALDPQQNISDLSCAFSTVGHPQERFISRMPVSYGIPFSIIEQCGTSRTENLECWDVAPGVPFHPFPPLPPYPRGKRGPPTSASGSTVGQSSQEGQVNSHDSRASFSEESPPSTSTNYQPDLCTPSNNQQIIPKRAKELSYDLGRRYFRQQKWRNTKYGPPWLQRRNQWGCQGNFRGGVSTIGDDNISNEEISPYCSDEASGRVDKANDDYYQHLQNQNLH 2081
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18335836 18360225 + CrPI670011_08g005600.1 Cre08g0560 505478

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0560 2081 MobiDBLite consensus disorder prediction 1749 1773 - -
Cre08g0560 2081 SMART shorttest3 1071 1122 IPR006560 GO:0005634(InterPro)|GO:0042054(InterPro)
Cre08g0560 2081 MobiDBLite consensus disorder prediction 841 855 - -
Cre08g0560 2081 Pfam CW-type Zinc Finger 959 1005 IPR011124 GO:0008270(InterPro)
Cre08g0560 2081 MobiDBLite consensus disorder prediction 1926 1988 - -
Cre08g0560 2081 Pfam SET domain 1134 1240 IPR001214 GO:0005515(InterPro)
Cre08g0560 2081 FunFam Histone-lysine N-methyltransferase 951 1012 - -
Cre08g0560 2081 MobiDBLite consensus disorder prediction 29 50 - -
Cre08g0560 2081 Pfam AWS domain 1085 1120 IPR006560 GO:0005634(InterPro)|GO:0042054(InterPro)
Cre08g0560 2081 MobiDBLite consensus disorder prediction 457 492 - -
Cre08g0560 2081 ProSiteProfiles AWS domain profile. 1071 1121 IPR006560 GO:0005634(InterPro)|GO:0042054(InterPro)
Cre08g0560 2081 MobiDBLite consensus disorder prediction 530 574 - -
Cre08g0560 2081 CDD SET_SETD2 1122 1264 IPR044437 GO:0046975(InterPro)
Cre08g0560 2081 Gene3D - 956 1016 - -
Cre08g0560 2081 ProSiteProfiles Post-SET domain profile. 1248 1264 IPR003616 -
Cre08g0560 2081 MobiDBLite consensus disorder prediction 770 810 - -
Cre08g0560 2081 PANTHER SET DOMAIN PROTEINS 416 1944 IPR050777 GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0046975(PANTHER)
Cre08g0560 2081 ProSiteProfiles SET domain profile. 1123 1240 IPR001214 GO:0005515(InterPro)
Cre08g0560 2081 Gene3D SET domain 1019 1280 IPR046341 -
Cre08g0560 2081 ProSiteProfiles Zinc finger CW-type profile. 953 1007 IPR011124 GO:0008270(InterPro)
Cre08g0560 2081 MobiDBLite consensus disorder prediction 541 563 - -
Cre08g0560 2081 MobiDBLite consensus disorder prediction 1756 1773 - -
Cre08g0560 2081 MobiDBLite consensus disorder prediction 2044 2063 - -
Cre08g0560 2081 MobiDBLite consensus disorder prediction 841 891 - -
Cre08g0560 2081 SMART set_7 1123 1246 IPR001214 GO:0005515(InterPro)
Cre08g0560 2081 MobiDBLite consensus disorder prediction 1940 1988 - -
Cre08g0560 2081 SUPERFAMILY SET domain 1052 1261 IPR046341 -
Cre08g0560 2081 FunFam Histone-lysine N-methyltransferase 1018 1278 - -
Cre08g0560 2081 MobiDBLite consensus disorder prediction 465 483 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0560 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0498 Cre-Chr2:2121404 Cre08g0560 Cre-Chr8:18335836 8.90E-12 dispersed
Cre06g2137 Cre-Chr6:29144236 Cre08g0560 Cre-Chr8:18335836 1.80E-37 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g211 Blo01g01308 . Bda01g00676 . Bpe02g00629 . . Bma01g02090 Cmo04g02507 Cmo15g00659 . . . . . . . Bhi04g01862 Tan11g1236 . . Hepe02g2211 . Lcy10g1258 Cla08g00625 Cam08g1044 Cec08g0630 Cco08g0742 Clacu08g0751 . Cre08g0560 . . Cone17ag0818 Cone20ag0423 . . . Cme03g00490 . . . . . . . . . . . . . Car04g02314 Car15g00596 Cpe01g02076 . . . . . . . . . . . . . . . Lsi08g00466 . Chy03g00750 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003381 1 5 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 2 1 6 3 1 48
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54151 PF00856 SET 3.70E-18 No_clan Cre TR