Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0573 ATGAAGTCCTTAAATCCATCAAACAGCAACTTCAATTCCAGTCCATCTCCAACCCCATTAGAAACTTTCATCCAAGACATGGGGCGTTCAATGGAGACGCTTATTCTACTCACCGTGGTGAAAATAGCCATCATACCAAGCGTTTTTGTCATGGCGGCGACAGCGGCGGTAGCTTCTCAAGCCTTACCCGGGTGCGATGAATGGTGTGGTGACGTGCAAATTCCATATCCATTCGGGACGAGGGAAGGGTGTTATCTGAATGAAACATTCTTCATTGAGTGTAACACAACTCATTACGATTCTCCAAAGGCATTTCTAACGGGCGGCAACGTTAATGTTACAAATATATCAATCTCGGGGGAGCTCCAAATCTTGAACTTAATGGCCCAAGATTGCTACCCGCCAAAAATTGGTCCTGATGTTTTTTCCTCTATCTTTCTCCATATACCTGGGTACACTATTTCCAGTACTAAAAACAAGTTCATTGCTATCGGCTGCGATACTCTCGGTTTTATTTCCGGCCAAAGCAAAGAAGACCAGTCCTTCACAACTGCATGTGTGGCATTGTGTGATGACATTAGCTCGGTTAAAGATGGGGCATGCTCTGGCAATGGGTGTTGTCAGTTGGAGATTCCCAGTGGCCTTCATTATTTGGAAATTCAGGTTAGCAGCTTAAGCAATCACACTAATGTGTCGAGTTTCAATCCTTGTGGTTATGCGTTTGTAATTGAACAACACAACTTCAACTTCTCCTCCAACTATGTACGCAATTTTCCTCAAAACAGAATTTCGGCAGTGCTTGATTGGGCCATTACTAACACTACATGCGTAACGGCTAAGAACAAAACTAATTGTATATGTGGCCCAAATAGCACCAAGGTTGACTTGCTCGACGATAAATCTCAATATCTTTGCCAGTGCTTGGAAGGCTTTGAGGCGAATCCATATCTTCCTCAAGGTTGTCAAGATATAGATGAGTGCAAGGATGAAAGTCTTAATGATTGCAAGTATGAGTGTGTTAATACAATAGGAAACTATACTTGCAATTGTCCAAAGGACTTTAAAGGAGATGGAAGACGTGGAGGAGAAGGTTGCACCCAAAACGCCAAGTCTTTTGTTCAAATCATTGTCGGAGTTACTGTGGGGTTCACAGTTTTAGTAATTGGGAGTACATGGTTATACTTGGGTTACAAAAAGTGGAAGTTCATTAAACTGAAGGAGAAGTTTTTTCAGAACAATGGCGGTTTAATGCTTCAACAACATCTTTCTCAATGGCAGTCATCCACTGACATGGTTAGAATTTTCACCCAAGAGGAGCTGGACAAGGCTACAAACAAGTACGACGAAAGTGCAGTGGTCGGAAAAGGTGGTTACGGTACTGTTTACAAAGGAGTCTTACATGATGGTTCGGTAGTCGCAATTAAGAAATCAAAATTGGTAGACCAATCTCAAACTTCTCAATTCATTAATGAAGTCATTGTTCTGTCCCAAATCAACCACCGTAACGTGGTCAAGCTCTTAGGATGTTGTTTGGAGACACAAGTTCCATTGTTGGTGTACGAGTTCATCACCAATGGCACACTTTACGACCACATCCATGGAAAAGCCAACCAAGATTCTCTTCCATGGGAAGCTCGTTTGAGAATAGCTTCCGAAACTGCAGGGGTTATTTCATATCTTCATTCTTCAGCTTCCACTCCAATTATCCACAGAGATATCAAGACAACCAACATACTTTTAGACCATAATTACACTGCAAAAGTATCTGATTTCGGGGCTTCCAAGTTGGTCCCAATGGATCAAACTCAATTATCCACGATGGTGCAAGGAACGCTTGGATATTTAGACCCTGAATATTTGTTAACGAGTGAGTTGACAGAGAAGAGCGATGTGTACAGCTTTGGAATAGTGCTTCTAGAGCTTATAACAGGGAAGAAGGCAGTGAGTTTCGAGGGGCCAGAAGCGGAGAGGAACCTAGCCATGTATGTCCTATGTGCAATGAAGGAAGATCGTGTGGTAGAAGTTGTGGAAAAGGGAATGGCGACGGAAGCCAACATTGGGCAGATAAAAGAAGCGGCAAAGTTAGCAACAAAGTGTTTGAGAATAAGGGGGGAGGAACGGCCTAGCATGAAGGAGGTGGCCATGGAGTTGGAGGGGCTGAAAGGGTTGATTGAGGCTAATGAGAAACTGGAGAGCACAGGAGAGGCGATGGTGGGTTATTTGGTGCAATCCGATGGAGGTTCAGAATCAACATCCAACCAGTTTACTGCAAGTGGGAGCACAAATGTTGTGGATGATAGTATGAAGGTCGAGATTTTGCCACTCATGCATCATGGAAGATAA 2343 43.24 MKSLNPSNSNFNSSPSPTPLETFIQDMGRSMETLILLTVVKIAIIPSVFVMAATAAVASQALPGCDEWCGDVQIPYPFGTREGCYLNETFFIECNTTHYDSPKAFLTGGNVNVTNISISGELQILNLMAQDCYPPKIGPDVFSSIFLHIPGYTISSTKNKFIAIGCDTLGFISGQSKEDQSFTTACVALCDDISSVKDGACSGNGCCQLEIPSGLHYLEIQVSSLSNHTNVSSFNPCGYAFVIEQHNFNFSSNYVRNFPQNRISAVLDWAITNTTCVTAKNKTNCICGPNSTKVDLLDDKSQYLCQCLEGFEANPYLPQGCQDIDECKDESLNDCKYECVNTIGNYTCNCPKDFKGDGRRGGEGCTQNAKSFVQIIVGVTVGFTVLVIGSTWLYLGYKKWKFIKLKEKFFQNNGGLMLQQHLSQWQSSTDMVRIFTQEELDKATNKYDESAVVGKGGYGTVYKGVLHDGSVVAIKKSKLVDQSQTSQFINEVIVLSQINHRNVVKLLGCCLETQVPLLVYEFITNGTLYDHIHGKANQDSLPWEARLRIASETAGVISYLHSSASTPIIHRDIKTTNILLDHNYTAKVSDFGASKLVPMDQTQLSTMVQGTLGYLDPEYLLTSELTEKSDVYSFGIVLLELITGKKAVSFEGPEAERNLAMYVLCAMKEDRVVEVVEKGMATEANIGQIKEAAKLATKCLRIRGEERPSMKEVAMELEGLKGLIEANEKLESTGEAMVGYLVQSDGGSESTSNQFTASGSTNVVDDSMKVEILPLMHHGR 780
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18599676 18603214 + CrPI670011_08g005730.1 Cre08g0573 505491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0573 780 ProSitePatterns Serine/Threonine protein kinases active-site signature. 568 580 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre08g0573 780 FunFam Wall-associated receptor kinase 2 523 738 - -
Cre08g0573 780 ProSitePatterns Calcium-binding EGF-like domain signature. 323 348 IPR018097 GO:0005509(InterPro)
Cre08g0573 780 CDD EGF_CA 323 357 - -
Cre08g0573 780 Gene3D Phosphorylase Kinase; domain 1 418 522 - -
Cre08g0573 780 CDD STKc_IRAK 453 720 - -
Cre08g0573 780 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 61 731 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(InterPro)|GO:0007166(PANTHER)
Cre08g0573 780 Pfam Protein tyrosine and serine/threonine kinase 452 717 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre08g0573 780 Gene3D Transferase(Phosphotransferase) domain 1 523 737 - -
Cre08g0573 780 FunFam Fibrillin 2 318 361 - -
Cre08g0573 780 SMART egfca_6 323 366 IPR001881 GO:0005509(InterPro)
Cre08g0573 780 ProSitePatterns Protein kinases ATP-binding region signature. 453 476 IPR017441 GO:0005524(InterPro)
Cre08g0573 780 Pfam Wall-associated receptor kinase galacturonan-binding 65 120 IPR025287 GO:0030247(InterPro)
Cre08g0573 780 SMART serkin_6 447 724 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre08g0573 780 SUPERFAMILY Protein kinase-like (PK-like) 425 717 IPR011009 -
Cre08g0573 780 ProSiteProfiles Protein kinase domain profile. 447 720 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre08g0573 780 SUPERFAMILY EGF/Laminin 322 358 - -
Cre08g0573 780 Gene3D Plasmodium vivax P25 domain 262 372 - -
Cre08g0573 780 ProSiteProfiles EGF-like domain profile. 323 357 IPR000742 -
Cre08g0573 780 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 339 350 IPR000152 -
Cre08g0573 780 FunFam Wall-associated receptor kinase 2 417 522 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g0573 Cre-Chr8:18599676 Cre08g0577 Cre-Chr8:18638940 2.00E-255 dispersed
Cre08g0571 Cre-Chr8:18558434 Cre08g0573 Cre-Chr8:18599676 1.70E-275 proximal
Cre08g0573 Cre-Chr8:18599676 Cre08g0574 Cre-Chr8:18611652 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64319 PF00069 Pkinase 3.40E-48 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0573 - - - 0.0