Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0574 ATGAGGCGTCCAATGGAGACGCTTGTGCAACTTACAGCAGTGAAAATAATAGCCATCTTATCAGCGGCTTTTGTCGTCGTAGCGGCCACAGCGAACACAACCGTGACATTAGCTTCAAAAGCCTTACCTGGGTGCGACGAATGGTGCGGCGACGTGCAGATTCCATATCCTTTCGGAACGAGGAAAGGGTGTTATCTAAATGAAATGTTCTTCATTGAGTGTAACACAACTCATTACGATTCTCCAAAGGCATTTCTAGGGAGCGGTAACCTTAATGTTACTAATATATCCATCTCGGGGGAGCTCCAAATCATGTACCCCGCGGCCCAAGATTGCCACCCTCCAAATATTGGTCCTGATGTTTTTGCCTCCATCTTTCTCGATGTACCTGCCTACACTATTTCCAGTTCCAAAAACAAGTTCATTGCTATCGGCTGCGATACTTTGGCTGGTTTTTCCGGTCGCGACCCAGAAGGGAAAACCTTTAGAACTGCATGTGTGGCGTTGTGTCATGATATTAGTTCTGTTAAAGATGGGGCATGCTCTGGCAATGGGTGCTGTCAGTTGGAGATTCCCAGTGGCCTTAATTATTTGGAGTTTACGGTCAACAGTTTAAACAATCACATTAATGTGTCGAGTTTCAATCCTTGCGGAACAAAACTAATTTGTGGCTCAAATAGCACAAAGGTTGACTTGCTTGATGGTCGATCTCAATATCGTTGCCAGTGCTTGGAAGGCTTTGAGGGGAATCCATATCTCCCCCAAGGTTGTCAAGATATTGACGAGTGCAAGGACGAAAGACTTCACGACTGCAGGTTTGAGTGTGTTAATACAATAGGAAACTATACTTGCAATTGTCCAAAGGACTTCAAAGGAGATGGAAGACGTAGGGGAGAGGGTTGCACCCGAAAATCCAAGTCTTTTGTTCAAATCATTGTCGGAGTTACTGTGGGGTTCACAGTTTTAGTAATTGGGAGTACATGGTTATACTTGGGTTACAGAAAGTGGAAGTTCATTAAACTGAAGGAGAAAGTTTTTGAGAACAATGGTGGTTTGATGCTGCAACAGCATCTTTCTCAATGGCAATCATCCACTGACATGGTTAGAATTTTCACTCAAGAGGAGCTGGACAAGGCTACAAACAAGTACAACGAAAGTGCAGTGGTTGGAAAAGGTGGCTACGGTACTGTTTACAAAGGAGTTTTAGACGACGGTTCGGTAGTTGCAATCAAGAAATCAAAATTGGTGGACCAATCCCAAACATCTCAATTCATTAACGAAGTCATTGTTCTGTCCCAAATCAACCACCGTAATGTGGTCAAGCTCTTAGGATGTTGTTTAGAGACAGAAGTTCCATTGTTGGTGTATGAGTTCATCGCCAACGGCACACTTTACGAATATGTCCATGATAAAACCAATGATCGTCATTCCCTTTCATGGGAAGCTCGTTTGAGAATAGCTTCCGAAACTGCAGGGGTGATTGCATATTTGCATTCTTCAGCTTCCACTCCCATTATTCATAGGGATATCAAGACAACCAACATACTTTTAGACCATAATTGTACTGCAAAGGTCTCTGATTTTGGTGCTTCCAAGTTGGTTCCCATAGATCAATCTCAGTTATCCACGATGGTGCAAGGAACTCTTGGATATTTAGACCCTGAATACTTGTTAACCAGCGAGTTGACAGAGAAGAGCGATGTGTACAGCTTTGGAATAGTGCTTCTAGAGCTTATAACAGGGAAGAAGGCAGTGAGTTTCGAGGGGCCAGAAGCGGAGAGGAACCTAGCCATGTATGTCCTATGTGCAATGAAGGAAGATCGTGTGGTAGAAGTTGTGGAAAAGGGAATGGCGACGGAAGCCAACATTGGGCAGATAAAAGAAGCGGCAAAGTTAGCAACAAAGTGTTTGAGAATAAGGGGGGAGGAACGGCCTAGCATGAAGGAGGTGGCCATGGAGTTGGAGGGGCTGAGAGTGTTGATTCAGGCTAATGAGAAATTAGAGAGCACAAGAGAGGAGATGATGGGTTATTTGGTGCAATCAGATGGAGGTTCAGAATCAACATCCAACCAATTTACTGCGAGTGGGAGCACAAATGCTGTGGATGATAGTATGAAGGTTCACATTTTGCCATTGATCCATAATGGAAGATGA 2154 44.01 MRRPMETLVQLTAVKIIAILSAAFVVVAATANTTVTLASKALPGCDEWCGDVQIPYPFGTRKGCYLNEMFFIECNTTHYDSPKAFLGSGNLNVTNISISGELQIMYPAAQDCHPPNIGPDVFASIFLDVPAYTISSSKNKFIAIGCDTLAGFSGRDPEGKTFRTACVALCHDISSVKDGACSGNGCCQLEIPSGLNYLEFTVNSLNNHINVSSFNPCGTKLICGSNSTKVDLLDGRSQYRCQCLEGFEGNPYLPQGCQDIDECKDERLHDCRFECVNTIGNYTCNCPKDFKGDGRRRGEGCTRKSKSFVQIIVGVTVGFTVLVIGSTWLYLGYRKWKFIKLKEKVFENNGGLMLQQHLSQWQSSTDMVRIFTQEELDKATNKYNESAVVGKGGYGTVYKGVLDDGSVVAIKKSKLVDQSQTSQFINEVIVLSQINHRNVVKLLGCCLETEVPLLVYEFIANGTLYEYVHDKTNDRHSLSWEARLRIASETAGVIAYLHSSASTPIIHRDIKTTNILLDHNCTAKVSDFGASKLVPIDQSQLSTMVQGTLGYLDPEYLLTSELTEKSDVYSFGIVLLELITGKKAVSFEGPEAERNLAMYVLCAMKEDRVVEVVEKGMATEANIGQIKEAAKLATKCLRIRGEERPSMKEVAMELEGLRVLIQANEKLESTREEMMGYLVQSDGGSESTSNQFTASGSTNAVDDSMKVHILPLIHNGR 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18611652 18615257 + CrPI670011_08g005740.1 Cre08g0574 505492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0574 717 Pfam Protein tyrosine and serine/threonine kinase 387 654 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre08g0574 717 FunFam Fibrillin 2 254 297 - -
Cre08g0574 717 CDD EGF_CA 259 293 - -
Cre08g0574 717 SUPERFAMILY EGF/Laminin 258 295 - -
Cre08g0574 717 SMART egf_5 216 258 IPR000742 -
Cre08g0574 717 SMART egf_5 262 302 IPR000742 -
Cre08g0574 717 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 275 286 IPR000152 -
Cre08g0574 717 Gene3D Phosphorylase Kinase; domain 1 354 458 - -
Cre08g0574 717 Pfam Wall-associated receptor kinase galacturonan-binding 45 100 IPR025287 GO:0030247(InterPro)
Cre08g0574 717 ProSitePatterns Protein kinases ATP-binding region signature. 389 412 IPR017441 GO:0005524(InterPro)
Cre08g0574 717 FunFam Wall-associated receptor kinase 2 459 676 - -
Cre08g0574 717 Pfam Calcium-binding EGF domain 259 291 IPR049883 -
Cre08g0574 717 SUPERFAMILY Protein kinase-like (PK-like) 361 655 IPR011009 -
Cre08g0574 717 CDD STKc_IRAK 389 657 - -
Cre08g0574 717 FunFam Wall-associated receptor kinase 2 353 458 - -
Cre08g0574 717 ProSitePatterns Serine/Threonine protein kinases active-site signature. 505 517 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre08g0574 717 SMART serkin_6 383 661 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre08g0574 717 Gene3D Laminin 213 301 - -
Cre08g0574 717 ProSiteProfiles Protein kinase domain profile. 383 661 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre08g0574 717 Gene3D Transferase(Phosphotransferase) domain 1 459 678 - -
Cre08g0574 717 SMART egfca_6 259 302 IPR001881 GO:0005509(InterPro)
Cre08g0574 717 ProSitePatterns Calcium-binding EGF-like domain signature. 259 284 IPR018097 GO:0005509(InterPro)
Cre08g0574 717 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 41 670 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(InterPro)|GO:0007166(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g0571 Cre-Chr8:18558434 Cre08g0574 Cre-Chr8:18611652 2.00E-252 dispersed
Cre08g0574 Cre-Chr8:18611652 Cre08g0577 Cre-Chr8:18638940 3.70E-232 dispersed
Cre08g0573 Cre-Chr8:18599676 Cre08g0574 Cre-Chr8:18611652 0.00E+00 tandem
Cre08g0574 Cre-Chr8:18611652 Cre08g0575 Cre-Chr8:18631608 2.50E-204 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64320 PF07714 PK_Tyr_Ser-Thr 2.00E-48 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0574 - - - 0.0