Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0575 ATGAGACGTCCAACCGCCGAGACGCTTGTGGTTCACATAGCCATCTTTTCAGCGGTGGTGGCGGCGACAGTAGCTTCGCAAGCCAAACCCGGGTGTGAAAGTAAGTGTGGGAACTTGGAAATTCCATATCCGTTCGGGATGAAGGAAGGGTGTTATCTCAACATTAATTTCTCTGTCACCTGCAAAACAAATCATTTGGACTCCCCAAAGGCATTTCTAATGAACAGCAACATTGAAGTAACCAATATATCCCTCTATGGCGAGCTCAACATCTTGAACTACGTAGCCCGAGATTGCTACACAAAAGATGGCCTTCCTGACATCAACAACAACAGACCAAGTCTCAGGGTGCCCATGTTCACAATTTCCAATACAAAGAACAAGTTAACCGTCGTCGGCTGCGACACTTACGCTTATATTTACGGTCAACTTGAGGGGGGATCCTACACAAGTGGGTGCATGGGGTTGTGTGGAAACAGTAGTAGAGCTATAAAAGATGGGTCCTGCTCTGGGAGTGGGTGCTGTCAATTGGAGATTCCCAAAGGCCTAAGAAATTTGGAGTTGGAGGTGAGAAGCTTCAAAAATCATACTCAAGTACACAGCTTCAATCCATGTGGGCATGCTTTTGTAGTCCAACAAGACAATTTTACTTTCTCTACTAAATATATTGAAAACTTCACGGAAGACAAAGTTCCGCTAGTGCTTGATTGGGGCATCAAAAAAGGTGCTTGCTTAACAGACCAATGTCCATGTGGACAAAACAGCAAAAGAAATTATAGCAAATCCCTTGATGGATCTGAATATTATTGTGACTGCTTGGATGGTTTTCGTGGAAATCCTTATCTCCCTCAAGGTTGTCAAGATATAAATGAATGCGAAGAGGGGTCCCATGACTGTGTACCCCAAGCTAAGTGTGAAGACAAACCAGGAAACTATATCTGCTCTTGTCCTGAGAAGTATGAAGGAGATGGAAAACTTGGGGGAACAGGTTGCAAACGAAAGTACTCCAACTCCATGTTCATTAAAATTATCATTGGAACTGGTGTGGGGTTTGTAGTTTTACTGATTGGTATCTCATGGTTATACTTGGGTTACAAGAAGTGGAAGTTCATCCAACAGAAAGAAAAGTTTTTCAAGAAAAATGGAGGCTCCATGCTTCAACAACACCTTTCTCAGTGGCAATCACCTGCTGACACAGTCAGAATTTTCAGCCAAGAGGAGTTGGAAAAAGCTACAAACAAGTTCAATGAAAGCACAGTGGTAGGAAAAGGTGGCTACGGCACTGTTCACAAAGGAGTCTTAGACGACGGTTCGGTTGTCGCGATTAAGAAGTCACAATTAGTGGACCAATCCCAAACTTCCCAATTCATCAACGAAGTCATTGTTCTATCCCAAGTCAACCACCGTAATGTGGTCAAGCTCTTAGGATGTTGTTTGGAGACACAAGTTCCATTGTTGGTATACGAGTTCATCACCAATGGCACACTCTTTGACCACATCCATGACCGAACAAAGTATTCAAATCATCTTTCCTGGGAAGCTCGCTTGAGAATAGCTTCAGAAACTGCAGGGGTCATTTCATATTTGCATTCTTCAGCTTCTACACCAATTATCCACAGAGATATCAAATCCACTAACATACTTTTAGACCATAATTTCATTGCAAAGGTGTCGGATTTCGGCGCCTCGAAATTGGTTCCAATGGATCAAACTCAATTATCCACAATGGTGCAAGGAACCCTTGGATATTTGGATCCTGAATACTTGTTAACGAGCGAGTTGACAGAGAAGAGCGATGTGTACAGCTTAGCTTTGGAATAG 1821 43.0 MRRPTAETLVVHIAIFSAVVAATVASQAKPGCESKCGNLEIPYPFGMKEGCYLNINFSVTCKTNHLDSPKAFLMNSNIEVTNISLYGELNILNYVARDCYTKDGLPDINNNRPSLRVPMFTISNTKNKLTVVGCDTYAYIYGQLEGGSYTSGCMGLCGNSSRAIKDGSCSGSGCCQLEIPKGLRNLELEVRSFKNHTQVHSFNPCGHAFVVQQDNFTFSTKYIENFTEDKVPLVLDWGIKKGACLTDQCPCGQNSKRNYSKSLDGSEYYCDCLDGFRGNPYLPQGCQDINECEEGSHDCVPQAKCEDKPGNYICSCPEKYEGDGKLGGTGCKRKYSNSMFIKIIIGTGVGFVVLLIGISWLYLGYKKWKFIQQKEKFFKKNGGSMLQQHLSQWQSPADTVRIFSQEELEKATNKFNESTVVGKGGYGTVHKGVLDDGSVVAIKKSQLVDQSQTSQFINEVIVLSQVNHRNVVKLLGCCLETQVPLLVYEFITNGTLFDHIHDRTKYSNHLSWEARLRIASETAGVISYLHSSASTPIIHRDIKSTNILLDHNFIAKVSDFGASKLVPMDQTQLSTMVQGTLGYLDPEYLLTSELTEKSDVYSLALE 606
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18631608 18634358 + CrPI670011_08g005750.1 Cre08g0575 505493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0575 606 FunFam Wall-associated receptor kinase 2 385 490 - -
Cre08g0575 606 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 28 603 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(InterPro)|GO:0007166(PANTHER)
Cre08g0575 606 ProSiteProfiles Protein kinase domain profile. 415 606 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre08g0575 606 ProSitePatterns Serine/Threonine protein kinases active-site signature. 537 549 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre08g0575 606 SMART egfca_6 288 332 IPR001881 GO:0005509(InterPro)
Cre08g0575 606 SUPERFAMILY EGF/Laminin 287 323 - -
Cre08g0575 606 ProSitePatterns Protein kinases ATP-binding region signature. 421 444 IPR017441 GO:0005524(InterPro)
Cre08g0575 606 Gene3D Phosphorylase Kinase; domain 1 387 490 - -
Cre08g0575 606 Gene3D Laminin 241 327 - -
Cre08g0575 606 Gene3D Transferase(Phosphotransferase) domain 1 491 605 - -
Cre08g0575 606 SMART serkin_6 415 606 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre08g0575 606 Pfam EGF domain 292 325 IPR024731 -
Cre08g0575 606 FunFam Fibrillin 2 283 327 - -
Cre08g0575 606 CDD EGF_CA 288 323 - -
Cre08g0575 606 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 305 316 IPR000152 -
Cre08g0575 606 SMART egf_5 243 287 IPR000742 -
Cre08g0575 606 SMART egf_5 291 332 IPR000742 -
Cre08g0575 606 SUPERFAMILY Protein kinase-like (PK-like) 394 604 IPR011009 -
Cre08g0575 606 ProSitePatterns Calcium-binding EGF-like domain signature. 288 314 IPR018097 GO:0005509(InterPro)
Cre08g0575 606 Pfam Wall-associated receptor kinase galacturonan-binding 32 85 IPR025287 GO:0030247(InterPro)
Cre08g0575 606 ProSiteProfiles EGF-like domain profile. 288 323 IPR000742 -
Cre08g0575 606 Pfam Protein kinase domain 416 604 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g0575 Cre-Chr8:18631608 Cre08g0577 Cre-Chr8:18638940 9.20E-216 dispersed
Cre08g0574 Cre-Chr8:18611652 Cre08g0575 Cre-Chr8:18631608 2.50E-204 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64321 PF00069 Pkinase 2.70E-38 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0575 - - - 0.0