Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0579 ATGCTTCAACAACATCTTTCTCAATGGCAATCACCCGACATGCTCAAAATTTTCACCCAAGAAGAGTTGGAGAAGGCTACAAACAAGTACGACGAAAGCACAGTGGTTGGCAAAGGTGGCTACGGTACCGTTTACAAAGGAGTCTTAGATGACGGTTTGGCAGTTGCAATCAAGAAATCAAAATTAGTGAACCAATCCCAAACTGACCAGTTCATTAACGAAGTCATCGTTTTGTCCCAAATCAACCATCGCAACGTGGTCAAACTCATAGGGTGTTGTTTGGAGACAAAGGTTCCATTGTTGGTGTACGAGTTCGTGACCAACGGCACACTCTTTGAACACATCCACCGCAAAACCAACCATGCTTATCTCCCATGGGAAGCTCGCTTGAAAATAGCTTCGGAAATTGCCGGCGTCCTTTCATATTTGCATTCTTCCGCTTCTACTCCAATTATCCATAGAGATATCAAGTCCAATAATATACTTTTAGACCAAAACTACACAGCAAAAGTCTCTGATTTCGGAACGTCAAAGCTTGTTCCGTTGGATCGAACTCAAATATCCACAATGGTGCAAGGGACAGTTGGGTATTTGCATCCGGAATATTTTTTGACGAAGCTTGTAACGGGGAAGAAGGCAGTGTGTTTTGATGGGCCAGAAGAAGAGAGGAATCTAGCGATGTATGTGCTGTTTGCAATGGAAGAAGGTCGTGTGGAAGAAGTTGTGGAGAAGGGAATGGCGACAGAAGGAAACTTTGAGCAAATAAAAGAAGTGGCAAAACTGGCAAGAGACTGTGTGAAAGTAAAAAGGGCGGAGCGGCCAACCATGAAGGAGGTAGCTATGGAGTTGGAGGGACTGAAACTGATGCAGGTTGAAAACTGTTCATGGGATAGAAGCAATTTGTTCAATGGAGCTTTAAACTCAAGCCAACATGTTTCCAATGATACGGACGAGAGCATTGAAGGCTGA 969 43.86 MLQQHLSQWQSPDMLKIFTQEELEKATNKYDESTVVGKGGYGTVYKGVLDDGLAVAIKKSKLVNQSQTDQFINEVIVLSQINHRNVVKLIGCCLETKVPLLVYEFVTNGTLFEHIHRKTNHAYLPWEARLKIASEIAGVLSYLHSSASTPIIHRDIKSNNILLDQNYTAKVSDFGTSKLVPLDRTQISTMVQGTVGYLHPEYFLTKLVTGKKAVCFDGPEEERNLAMYVLFAMEEGRVEEVVEKGMATEGNFEQIKEVAKLARDCVKVKRAERPTMKEVAMELEGLKLMQVENCSWDRSNLFNGALNSSQHVSNDTDESIEG 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18668640 18669659 + CrPI670011_08g005790.1 Cre08g0579 505497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0579 322 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 2 294 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(InterPro)|GO:0007166(PANTHER)
Cre08g0579 322 FunFam Wall-associated receptor kinase 2 106 302 - -
Cre08g0579 322 Gene3D Phosphorylase Kinase; domain 1 3 105 - -
Cre08g0579 322 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre08g0579 322 Pfam Protein kinase domain 30 212 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre08g0579 322 SMART serkin_6 30 289 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre08g0579 322 SUPERFAMILY Protein kinase-like (PK-like) 6 284 IPR011009 -
Cre08g0579 322 PIRSF ILK 9 303 - -
Cre08g0579 322 ProSitePatterns Protein kinases ATP-binding region signature. 36 59 IPR017441 GO:0005524(InterPro)
Cre08g0579 322 Gene3D Transferase(Phosphotransferase) domain 1 106 303 - -
Cre08g0579 322 FunFam Wall-associated receptor kinase 2 1 105 - -
Cre08g0579 322 ProSiteProfiles Protein kinase domain profile. 30 286 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g0579 Cre-Chr8:18668640 Cre11g1337 Cre-Chr11:14037115 4.20E-98 dispersed
Cre08g0577 Cre-Chr8:18638940 Cre08g0579 Cre-Chr8:18668640 1.40E-122 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64323 PF00069 Pkinase 1.50E-37 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0579 - - - 0.0