Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0583 ATGGGCGATATTACGACGAAATTCCCAAGAAAACCTACCCATAGCCCAGATCCTATCCCACGAACAGCCGCTTCCTATTATAAATCTCCAGAACAGGACTCCACTTCCGAAGATTGCATCATTTTCAGAGGCTGGGACAGTGCTGCTGCCGTGGACGATGACTCTCAATCGGAATCGGGGGTTTGTTCACCCACGCTTTGGGGTTCCAATTCTCGAACCAGCCCCCAATTTCACCGCCCTCGTAATCGCAGCCTCTCCCCAACTTCCCGAACCCAAGCCATAGCCAGAGGCCAACAGGAGCTCATGGAGATGGTCAGGAACATGCCCGAATCATCTTACGAGCTCTCTCTCAAAGATCTCGTTGAACATCACTTGACTAATTCGAAACGTCAACAAGACGGTGACGCTGCTTCCCTTTCAAGAGACGATTCCAGCTCTGAAACTTCCTTCCGAAGAGACCGTAGCAAGAACCGGAGTGAAACTAGGGCACTTGTTACCAGAAGTAGAAGCGTCGATAACGGTGGATTTTACCTCAAAATGTTCTTCCCACTGCCTTTCGGCCAGGTTTCGGCTAAAAAGAAGAGTAATCTTAGAACCGATTCGGGGTTGAGTGGTAGTTCGAGAGTGTCGCCGAAGCCACCACCGGTGGACAGAGACTGGTGGAGGAAGAGATCGTCGGTGGCTGGTGGCGAGAACGAGGGTAGTATCTCCGGCGGAAGCATGACGAGTAGCGGCAGTAGTAATAGCACTAGCAGCGAAAGAAGCAATAGCAGATCCGACCCATCGGCCCACTTTGGCTTTCGAGTTGACGTTGTCAACAAGTTTACTATGGCATTCATGTCGTGGACTCGTAAACAAAGTGGGACCCAATGGCCGGTAGTCTTAGTCCAGCACGAAAACGCGTTTACTGAACCCTTCCCTTTAGCTTCCTTTGTCGCCATTTGGCAGATGGGATTTATGGGATTTCCTCTATCACGGGGTCTCCGATGTATACTTCGTTTTCTTTCTTTTGTTGATCTTGGTGTCAACTTTTTAGATTGGGGTAAATTTGCTTTTGCTTTAGTTTTTCTGCTTTATGGGTTGCTTCGTCATGAGATTCAAGGACAGAAGGGCTTATTTGGGTGCAAAAGAATCAGAGGGATGTCTACCAATGCTGCTGCTTGCGCTGAGAGAGCTACAAATGATGTGCTTATCGCTCCCGATTGGGCGATAAATATTGAGCTCTGTGATATCATTAACATGGATCCTAGGCAAGCGAAGGATGCATTGAAGATACTCAAGAAGCGTCTCGCTAGCAAAAGTCCTAAAATACAACTTCTAGCGCTCTATGTATTAGAGGCTCTAAGCAAAAATTGTGGCGATACTGTTTTTAAGCTGATCGTAGATCGTAATATCCTGCACGAAATGGTTAAAATTGTAAAGAAGAAGCCTGATTCAACTGTACGGGACAAAATATTAGCTTTGGTAGATGCATGGCAAGCAGCATTTGGTGGTGGCCCCAAGGGAAAGTATCCACAGTACTATGCAGCCTACAATGAATTGAAGAATGCTGGATTTCAATTTCCACCTAGAGAAGAGAACGTTGGGCAGTTCTTTAGTCCACCTCAGATACAGCCAGTCGCTGAGCACCCTGTTTCAGCCAGTTATGATGATCTTGCTGTTCAGGTTTCTCTCCAGTCTGATTCTTCTGGTTTAAGCTTGCCAGAAATTCAAAATGCACAGGGACTAGCAGATGTTCTATTGGAAATGCTTGGTGCGCTGGACCCTAAGACTCCCGAGGCTTTGAAGCAAGAAGTGATCGTTGATCTTGTTGATCAATGCCGTTCCTACCACAGCCGTGTCGTGATACTTGTGAATGAGACGACAGATGAGGAACTATTATGTCAAGGATTGGTATTGAATGACAGTCTGCAGCGTGTACTCAGCTACCACGATGACATTGCTAAAGGAACATTTGTGACGGAAGCTAGAAGAGCAGAACCTCCCGTTCCATCGGTTCCATATATCAACCCTGAGGACGATGAGTCGGAAGATGACTTCACACCGTTATCTCGCAGGCCAACGAGAGATCACGTTTATGAAAGGGACAGGAAACTGGCAAATGGTCAATCATCTCGAGTAAGTCCACTTCCTTCACCCTCATCAAATAAGTCGGCTGGTGCTGAAATGATGGATCATCTTAGCGGCGACATGTACAAACCTGAAGAGTCTCCAAGGATAGTTGAGCCACCATCAACTTCTTCTTCTTCACCTTTCTACACTAGACAGCCTTTGTTCGACGAACCACCTCCAAGAAGCATGCCCACCAATACACTCCCGGCAACACCTCGGGACGCTCAATCTCGGAGTGCCCTCCCTCCCCCACCCTCAAGACATAATCAAAGACAACTATATTTTGAGCAACAAAAAGCTGTTACAGGAGGCACTCAGCCCCATTTGAGCAACGATTATAGTTCTTATGACACCATAGTTGGGAATACCAAGAATCTTTCACTCAGTCCTACCCCAACCAGATCCGCTGAGCATGAAGAGGCCCTTTTCAAAGATCTGGTGGATTTTGCCAAGGCCAAGTCATCTTCATCCTCCAAATCCAACCGACCATTCTGA 2607 47.18 MGDITTKFPRKPTHSPDPIPRTAASYYKSPEQDSTSEDCIIFRGWDSAAAVDDDSQSESGVCSPTLWGSNSRTSPQFHRPRNRSLSPTSRTQAIARGQQELMEMVRNMPESSYELSLKDLVEHHLTNSKRQQDGDAASLSRDDSSSETSFRRDRSKNRSETRALVTRSRSVDNGGFYLKMFFPLPFGQVSAKKKSNLRTDSGLSGSSRVSPKPPPVDRDWWRKRSSVAGGENEGSISGGSMTSSGSSNSTSSERSNSRSDPSAHFGFRVDVVNKFTMAFMSWTRKQSGTQWPVVLVQHENAFTEPFPLASFVAIWQMGFMGFPLSRGLRCILRFLSFVDLGVNFLDWGKFAFALVFLLYGLLRHEIQGQKGLFGCKRIRGMSTNAAACAERATNDVLIAPDWAINIELCDIINMDPRQAKDALKILKKRLASKSPKIQLLALYVLEALSKNCGDTVFKLIVDRNILHEMVKIVKKKPDSTVRDKILALVDAWQAAFGGGPKGKYPQYYAAYNELKNAGFQFPPREENVGQFFSPPQIQPVAEHPVSASYDDLAVQVSLQSDSSGLSLPEIQNAQGLADVLLEMLGALDPKTPEALKQEVIVDLVDQCRSYHSRVVILVNETTDEELLCQGLVLNDSLQRVLSYHDDIAKGTFVTEARRAEPPVPSVPYINPEDDESEDDFTPLSRRPTRDHVYERDRKLANGQSSRVSPLPSPSSNKSAGAEMMDHLSGDMYKPEESPRIVEPPSTSSSSPFYTRQPLFDEPPPRSMPTNTLPATPRDAQSRSALPPPPSRHNQRQLYFEQQKAVTGGTQPHLSNDYSSYDTIVGNTKNLSLSPTPTRSAEHEEALFKDLVDFAKAKSSSSSKSNRPF 868
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18710741 18718650 - CrPI670011_08g005830.1 Cre08g0583 505501

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0583 868 SUPERFAMILY GAT-like domain 534 650 - -
Cre08g0583 868 MobiDBLite consensus disorder prediction 50 91 - -
Cre08g0583 868 MobiDBLite consensus disorder prediction 786 820 - -
Cre08g0583 868 Pfam GAT domain 577 650 IPR004152 GO:0035091(InterPro)|GO:0043130(InterPro)
Cre08g0583 868 MobiDBLite consensus disorder prediction 230 261 - -
Cre08g0583 868 MobiDBLite consensus disorder prediction 741 755 - -
Cre08g0583 868 MobiDBLite consensus disorder prediction 658 820 - -
Cre08g0583 868 MobiDBLite consensus disorder prediction 127 166 - -
Cre08g0583 868 Gene3D - 558 654 IPR038425 -
Cre08g0583 868 ProSiteProfiles VHS domain profile. 392 522 IPR002014 GO:0035091(InterPro)|GO:0043130(InterPro)
Cre08g0583 868 SMART VHS_2 385 518 IPR002014 GO:0035091(InterPro)|GO:0043130(InterPro)
Cre08g0583 868 MobiDBLite consensus disorder prediction 145 165 - -
Cre08g0583 868 FunFam TOM1-like protein 2 384 532 - -
Cre08g0583 868 CDD GAT_GGA-like_plant 569 647 - -
Cre08g0583 868 Gene3D - 379 539 IPR008942 -
Cre08g0583 868 MobiDBLite consensus disorder prediction 1 35 - -
Cre08g0583 868 Pfam VHS domain 389 517 IPR002014 GO:0035091(InterPro)|GO:0043130(InterPro)
Cre08g0583 868 MobiDBLite consensus disorder prediction 52 91 - -
Cre08g0583 868 SUPERFAMILY ENTH/VHS domain 388 523 IPR008942 -
Cre08g0583 868 CDD VHS 390 516 - -
Cre08g0583 868 MobiDBLite consensus disorder prediction 679 701 - -
Cre08g0583 868 MobiDBLite consensus disorder prediction 702 721 - -
Cre08g0583 868 PANTHER TOM1-LIKE PROTEIN 381 865 IPR044836 GO:0035091(InterPro)|GO:0043130(InterPro)|GO:0043328(InterPro)
Cre08g0583 868 ProSiteProfiles GAT domain profile. 561 649 IPR004152 GO:0035091(InterPro)|GO:0043130(InterPro)
Cre08g0583 868 MobiDBLite consensus disorder prediction 197 261 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0583 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g0302 Cre-Chr8:9047786 Cre08g0583 Cre-Chr8:18710741 2.10E-32 dispersed
Cre08g0583 Cre-Chr8:18710741 Cre11g1294 Cre-Chr11:12055601 9.70E-150 dispersed
Cre08g0583 Cre-Chr8:18710741 Cre08g1173 Cre-Chr8:24968136 5.60E-81 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g185 Blo01g01314 Blo12g01115 Bda01g00684 . Bpe02g00621 Bpe04g00015 Bma04g00022 Bma01g02098 . Cmo15g00650 . . . . . . . Bhi04g01843 Tan11g1214 . . . . . Cla08g00646 Cam08g1070 Cec08g0655 Cco08g0766 Clacu08g0775 . Cre08g0583 Cone4ag1441 . Cone17ag0809 Cone20ag0414 . Csa04g01732 . Cme03g00439 . . . . . . . . . . . . . Car04g02322 Car15g00588 Cpe01g02087 Cpe02g00872 . . . . . . . . . . . . . . Lsi08g00505 . Chy03g00557 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001242 1 5 2 2 2 2 4 2 2 3 2 2 4 2 2 4 2 4 4 2 2 2 1 2 2 3 2 5 3 1 76