Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre08g0642 ATGATGGATTTGAACTTTACCTCCCGGAAGCCACCGCAGACGGCGCCGAGGATGGACATCGAACAGATGCCGGAGGCTCCACACCGTGGGTATCACCACCGCCGTTCCCACTCCGATACCTCCTTCCGCTTCGCTAATTTTGACGATCTTCTCCTCTTCGACCCTCCCGACATCGATTTATCATCTGCTCTTCCTTCTCCCTCGCCGTCACCGTCTCCGACGCCGTCAGGGGCTCGTATGGCCGTCGATTCCTTCAATTCGAGGTCCCCTGAAGACGTCTCTGCCACAAAACCTAGGGCTGGAAACGGTAACTCCGCTTCCTTCTTCAGTTCTCACTACCGGAGCTTGTCGATGGATTCCGACTTCTTTGAGGGATTGGGGATGGCCGGAGATGGGAGTGACGGTGAAGTACTTGGCGGGAGAGTGACGGCGGGGGAGAAGAAGATGAGTCGTCATAGGCATAGCAATTCCATGGATGGGTCTTTGACCTCCTCGTTTGAAGCTGATTCCACCAAGAAAGCCATGGCACCTGATAAACTCGCTGAGCTTGCTTTGATGGACCCTAAAAGAGCTAAGAGGATTCTGGCAAATAGACAATCAGCTGCACGATCCAAGGAGAGGAAAATACGTTACACTAATGAACTAGAGAAGAAGGTGCAGATGCTTCAGTCAGAAGCCACTTCCCTTTCTGCTCAGGTCACAGTGTTACAGAGAGATACCACTGGATTGACTACTGAGAACAGAGAACTCAAGCTAAGGTTGCAAGCCATGGAGCAGCAAGCCCATCTGAGGGATGCTTTGAATGAGACACTGAAGGAGGAAGTGCAGCGGCTTAAGATAGTTGCGGCCCAACTGCCTGTTGCAAATGGCAACTCATTCAACATTGGAGGAGGGCTACCTCCTCAATTCCCTCCTCTCCAAACATCATCATTGCTTCAATTTGGCAACTCCCAGAATCATCATCAACAGCCACAACTGCTTCACATGTCTCAGCCTGATGCTCGAGGAGGGTCTCCCCCATCCCAGCCTCCCGGAGTTTAA 1041 52.07 MMDLNFTSRKPPQTAPRMDIEQMPEAPHRGYHHRRSHSDTSFRFANFDDLLLFDPPDIDLSSALPSPSPSPSPTPSGARMAVDSFNSRSPEDVSATKPRAGNGNSASFFSSHYRSLSMDSDFFEGLGMAGDGSDGEVLGGRVTAGEKKMSRHRHSNSMDGSLTSSFEADSTKKAMAPDKLAELALMDPKRAKRILANRQSAARSKERKIRYTNELEKKVQMLQSEATSLSAQVTVLQRDTTGLTTENRELKLRLQAMEQQAHLRDALNETLKEEVQRLKIVAAQLPVANGNSFNIGGGLPPQFPPLQTSSLLQFGNSQNHHQQPQLLHMSQPDARGGSPPSQPPGV 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19356321 19357969 - CrPI670011_08g006420.1 Cre08g0642 505560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre08g0642 346 Pfam bZIP transcription factor 189 245 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g0642 346 MobiDBLite consensus disorder prediction 156 170 - -
Cre08g0642 346 MobiDBLite consensus disorder prediction 296 346 - -
Cre08g0642 346 CDD bZIP_plant_RF2 190 239 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g0642 346 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 19 330 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cre08g0642 346 MobiDBLite consensus disorder prediction 145 171 - -
Cre08g0642 346 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 187 250 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g0642 346 MobiDBLite consensus disorder prediction 1 37 - -
Cre08g0642 346 SMART brlzneu 185 249 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g0642 346 Gene3D - 188 241 - -
Cre08g0642 346 SUPERFAMILY Leucine zipper domain 189 241 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre08g0642 346 MobiDBLite consensus disorder prediction 303 329 - -
Cre08g0642 346 MobiDBLite consensus disorder prediction 75 105 - -
Cre08g0642 346 FunFam Transcription factor VIP1 188 241 - -
Cre08g0642 346 Coils Coil 212 232 - -
Cre08g0642 346 Coils Coil 240 260 - -
Cre08g0642 346 MobiDBLite consensus disorder prediction 61 105 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0814 Cre-Chr2:4921570 Cre08g0642 Cre-Chr8:19356321 4.40E-41 dispersed
Cre02g0815 Cre-Chr2:4933479 Cre08g0642 Cre-Chr8:19356321 1.80E-40 dispersed
Cre06g1918 Cre-Chr6:26247998 Cre08g0642 Cre-Chr8:19356321 8.00E-31 dispersed
Cre07g0896 Cre-Chr7:7970892 Cre08g0642 Cre-Chr8:19356321 9.60E-51 dispersed
Cre08g0642 Cre-Chr8:19356321 Cre09g0925 Cre-Chr9:9354657 9.30E-88 dispersed
Cre08g0642 Cre-Chr8:19356321 Cre02g1236 Cre-Chr2:12535113 2.30E-09 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54154 PF00170 bZIP_1 2.50E-07 CL0018 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre08g0642 K20557 - csv:101215277 498.434