Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre08g0642 | ATGATGGATTTGAACTTTACCTCCCGGAAGCCACCGCAGACGGCGCCGAGGATGGACATCGAACAGATGCCGGAGGCTCCACACCGTGGGTATCACCACCGCCGTTCCCACTCCGATACCTCCTTCCGCTTCGCTAATTTTGACGATCTTCTCCTCTTCGACCCTCCCGACATCGATTTATCATCTGCTCTTCCTTCTCCCTCGCCGTCACCGTCTCCGACGCCGTCAGGGGCTCGTATGGCCGTCGATTCCTTCAATTCGAGGTCCCCTGAAGACGTCTCTGCCACAAAACCTAGGGCTGGAAACGGTAACTCCGCTTCCTTCTTCAGTTCTCACTACCGGAGCTTGTCGATGGATTCCGACTTCTTTGAGGGATTGGGGATGGCCGGAGATGGGAGTGACGGTGAAGTACTTGGCGGGAGAGTGACGGCGGGGGAGAAGAAGATGAGTCGTCATAGGCATAGCAATTCCATGGATGGGTCTTTGACCTCCTCGTTTGAAGCTGATTCCACCAAGAAAGCCATGGCACCTGATAAACTCGCTGAGCTTGCTTTGATGGACCCTAAAAGAGCTAAGAGGATTCTGGCAAATAGACAATCAGCTGCACGATCCAAGGAGAGGAAAATACGTTACACTAATGAACTAGAGAAGAAGGTGCAGATGCTTCAGTCAGAAGCCACTTCCCTTTCTGCTCAGGTCACAGTGTTACAGAGAGATACCACTGGATTGACTACTGAGAACAGAGAACTCAAGCTAAGGTTGCAAGCCATGGAGCAGCAAGCCCATCTGAGGGATGCTTTGAATGAGACACTGAAGGAGGAAGTGCAGCGGCTTAAGATAGTTGCGGCCCAACTGCCTGTTGCAAATGGCAACTCATTCAACATTGGAGGAGGGCTACCTCCTCAATTCCCTCCTCTCCAAACATCATCATTGCTTCAATTTGGCAACTCCCAGAATCATCATCAACAGCCACAACTGCTTCACATGTCTCAGCCTGATGCTCGAGGAGGGTCTCCCCCATCCCAGCCTCCCGGAGTTTAA | 1041 | 52.07 | MMDLNFTSRKPPQTAPRMDIEQMPEAPHRGYHHRRSHSDTSFRFANFDDLLLFDPPDIDLSSALPSPSPSPSPTPSGARMAVDSFNSRSPEDVSATKPRAGNGNSASFFSSHYRSLSMDSDFFEGLGMAGDGSDGEVLGGRVTAGEKKMSRHRHSNSMDGSLTSSFEADSTKKAMAPDKLAELALMDPKRAKRILANRQSAARSKERKIRYTNELEKKVQMLQSEATSLSAQVTVLQRDTTGLTTENRELKLRLQAMEQQAHLRDALNETLKEEVQRLKIVAAQLPVANGNSFNIGGGLPPQFPPLQTSSLLQFGNSQNHHQQPQLLHMSQPDARGGSPPSQPPGV | 346 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 19356321 | 19357969 | - | CrPI670011_08g006420.1 | Cre08g0642 | 505560 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre08g0642 | 346 | Pfam | bZIP transcription factor | 189 | 245 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre08g0642 | 346 | MobiDBLite | consensus disorder prediction | 156 | 170 | - | - | |
Cre08g0642 | 346 | MobiDBLite | consensus disorder prediction | 296 | 346 | - | - | |
Cre08g0642 | 346 | CDD | bZIP_plant_RF2 | 190 | 239 | IPR044759 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre08g0642 | 346 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 19 | 330 | - | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Cre08g0642 | 346 | MobiDBLite | consensus disorder prediction | 145 | 171 | - | - | |
Cre08g0642 | 346 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 187 | 250 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre08g0642 | 346 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
Cre08g0642 | 346 | SMART | brlzneu | 185 | 249 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre08g0642 | 346 | Gene3D | - | 188 | 241 | - | - | |
Cre08g0642 | 346 | SUPERFAMILY | Leucine zipper domain | 189 | 241 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre08g0642 | 346 | MobiDBLite | consensus disorder prediction | 303 | 329 | - | - | |
Cre08g0642 | 346 | MobiDBLite | consensus disorder prediction | 75 | 105 | - | - | |
Cre08g0642 | 346 | FunFam | Transcription factor VIP1 | 188 | 241 | - | - | |
Cre08g0642 | 346 | Coils | Coil | 212 | 232 | - | - | |
Cre08g0642 | 346 | Coils | Coil | 240 | 260 | - | - | |
Cre08g0642 | 346 | MobiDBLite | consensus disorder prediction | 61 | 105 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre02g0814 | Cre-Chr2:4921570 | Cre08g0642 | Cre-Chr8:19356321 | 4.40E-41 | dispersed | |
Cre02g0815 | Cre-Chr2:4933479 | Cre08g0642 | Cre-Chr8:19356321 | 1.80E-40 | dispersed | |
Cre06g1918 | Cre-Chr6:26247998 | Cre08g0642 | Cre-Chr8:19356321 | 8.00E-31 | dispersed | |
Cre07g0896 | Cre-Chr7:7970892 | Cre08g0642 | Cre-Chr8:19356321 | 9.60E-51 | dispersed | |
Cre08g0642 | Cre-Chr8:19356321 | Cre09g0925 | Cre-Chr9:9354657 | 9.30E-88 | dispersed | |
Cre08g0642 | Cre-Chr8:19356321 | Cre02g1236 | Cre-Chr2:12535113 | 2.30E-09 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54154 | PF00170 | bZIP_1 | 2.50E-07 | CL0018 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre08g0642 | K20557 | - | csv:101215277 | 498.434 |